| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4273 |
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| Symbol | |
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| ID | 6161221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4781329 |
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| End bp | 4782588 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641667050 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001793289 |
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| Protein GI | 171060940 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCCC TCATCCTCCT CGTCTTTCTC GGCGCGGCCG TGGCCGCCAT GCCGATCGCC
CACGCGCTGC TGCTGGCGGC GATGACCGCC GCCGCCACCT CCGACCGCGT GCCGCTGGAC
CTGCTGGTGC AGCAGATGGT CGCGCAGGTG CAGAGCTTTC CGCTGATCGC GATTCCGTTC
TTCATGCTGA CCGGCACGCT GATGATGGGC GGCAAGCTCG GCGAAGCGCT GGTCGGCGTG
CTGTCGACGC TGATCGGCCG CTTCCACGGT GGCCCGGCGC AGGTGGGCGT GCTGTCGTCG
ACGCTGTTCG GCGGTGTTTC CGGCTCGGCG GTGGCCGACG CCTCGGCGAT CGGCTCGCTG
CTGATTCCGT GGCACAAGCG GCTCGGCTAT CCGGCGGCGT TCTCGGCGGC GACGCTGGCG
GCCGCGGCCA CCATCGACAT CATGATCCCG CCGTCGATCC CGATGATCCT GTTCGCGCTG
ACCGCGAACG CGTCGATCGC CTCGCTGTTC GTCGCCGGCG TGCTGCCCGG CCTGCTGATG
TGCGGGGGTT TCATGGCGGT CTGCTGGTGG GTCGGCAAGC GCCGCAACTT CCCGCGTGAC
ACCACGCCGT TCGACGGTGT CGCCTTCCGC AGGCACCTGC TGTACGCCCT GCCGGCCGTC
GTGCTGCCGG TGCTGATCAT CATCTTCCTG CGCTTCGGCA TCGCCACGCC CACCGAGGTG
GCCGTGCTGT CGACGCTCTA CGCCGGTCTG GTCTCGGCGG TGATCTACCG CGACCTGAGC
TGGCGCCGGC TGGACGACGC GGTGGTGCAT GCCGGCCTGG CCACGGGCGT GGTGCTGCTG
GTGATCATGG CTTCGGCCGC GATCGGCTGG CTGCTGACCT TCGACCAGAT GCCGCAGGGC
ATCGCTCATT GGGTGCAGCA GAACGTGGAG ATGAAGTGGC TCGTGATCCT GCTGATGAAC
CTGCTGATGC TGTTCATGGG CATGTTCATC GACCTGCCGG CCGCCGTGCT GCTGCTGACA
CCGGTGTTCG TGCCACTGGC CCAGAGCATC GGCATGGACA TGACGCAGCT CGGAATCATG
ATGGTCGTGA ACCTGGCCAT CGGCCTGTAC ACGCCGCCGG TGGGCACCAC GCTGTTCATC
ACCAGCGCAC TGGCCAAGGT CAAGGTCGGC CAGACGGTGC GCGAACTGGG GCCCTTCTAC
CTGGTCGCCT TCGGCGTGCT GGCCCTGGTG TCCTACGTGC CGGCCAGCAT CCTGAAATGA
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| Protein sequence | MSALILLVFL GAAVAAMPIA HALLLAAMTA AATSDRVPLD LLVQQMVAQV QSFPLIAIPF
FMLTGTLMMG GKLGEALVGV LSTLIGRFHG GPAQVGVLSS TLFGGVSGSA VADASAIGSL
LIPWHKRLGY PAAFSAATLA AAATIDIMIP PSIPMILFAL TANASIASLF VAGVLPGLLM
CGGFMAVCWW VGKRRNFPRD TTPFDGVAFR RHLLYALPAV VLPVLIIIFL RFGIATPTEV
AVLSTLYAGL VSAVIYRDLS WRRLDDAVVH AGLATGVVLL VIMASAAIGW LLTFDQMPQG
IAHWVQQNVE MKWLVILLMN LLMLFMGMFI DLPAAVLLLT PVFVPLAQSI GMDMTQLGIM
MVVNLAIGLY TPPVGTTLFI TSALAKVKVG QTVRELGPFY LVAFGVLALV SYVPASILK
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