| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4271 |
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| Symbol | |
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| ID | 6161219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4779722 |
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| End bp | 4780714 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641667048 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001793287 |
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| Protein GI | 171060938 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCA ATCAATTCAC CCGCACCCTT CTGGCCCTGG CGGCCGGCGC CCTCTTATCC
CCGATGGCAG TGCAGGCGCA GACCGTCAAG CTGACGCTGG GCCACGGCGC GGCACCGGGC
AATCCGCGCC ACGAAGCCGC GGTGAAGTTC GCCGAGGTGC TCAAGGCCAA GACCGGCGGG
CGCATCGAGG TGCAGGTCGC ACCGTCGGCC CAGTTGGGCG ACGATGCCGC GATGGTGACG
GCGCTGCGCA CCGGCGCACT CGACATGTCG GCCAACTCGC AGGGTGCGGT CGCCAATGCG
GTGCCCGAGT ACGCCGCTTA CGGCATGCCG TTCCTGTTCT CGAACGCGGC GCAGGCCTTC
AAGCTGCTCG ACGGCCCGCT CGGCAAGGAG CTGAGCGACA AGACCGCAGC GAAGGGGCTG
GTCGTGCTCG GCTACTGGGA CAACGGCATC CGCCACATGA CCAACAGCAA GCGGGCGATC
ACCCAGGTCG AGGACATGAA GGGCCTGAAG ATGCGCACGC CGCCCGACGC GGTGCTGGTC
GACATCATGC AATCGCTCGG TGCCGAGGCG CAGCAGATCA AGTTCGCCGA GCTCTACGTG
GCGCTGCAGC AGGGCGTGGT CGACGGGCAG GAGAACCCGC TCGTCAACAT CCACGCCAGC
AAGCTCTACG AGGTGCAGAA GCACCTGGCG CTGACCAGCC ACATGTTCCA GATGACGCCC
TTCCTGATGA GCAAGCGCAC CTGGGACCGG CTGTCCGAGG CCGATCGCAA GGCCGTCACC
GAGGCCTCTG CCGAGGCCAC CGCGCTGCAG CGCAAGCAGT CCCAGGAGGT CGACGACAAG
CTGCTCGGCG AGCTCAAGGC CAAGGGCGTG CAGGTCACCA CGGTCGACAA GGCCGCCTTC
GAGAAGGCCA CCGCCGCGGT GGATGACAAG TGGCTGGCGA TGCCGATCGG CCCGTACGTC
AAGAAGGTCA TCGCGGCCGC TCGCGCCAAG TGA
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| Protein sequence | MQRNQFTRTL LALAAGALLS PMAVQAQTVK LTLGHGAAPG NPRHEAAVKF AEVLKAKTGG
RIEVQVAPSA QLGDDAAMVT ALRTGALDMS ANSQGAVANA VPEYAAYGMP FLFSNAAQAF
KLLDGPLGKE LSDKTAAKGL VVLGYWDNGI RHMTNSKRAI TQVEDMKGLK MRTPPDAVLV
DIMQSLGAEA QQIKFAELYV ALQQGVVDGQ ENPLVNIHAS KLYEVQKHLA LTSHMFQMTP
FLMSKRTWDR LSEADRKAVT EASAEATALQ RKQSQEVDDK LLGELKAKGV QVTTVDKAAF
EKATAAVDDK WLAMPIGPYV KKVIAAARAK
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