| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4269 |
|---|
| Symbol | |
|---|
| ID | 6162245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4777873 |
|---|
| End bp | 4778766 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641667046 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001793285 |
|---|
| Protein GI | 171060936 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTACA TCCCGCCCAT CACCAACCTG CAGGCCTTCG AGGCGGTGGC CCGGCGCCGC
AGCTTTGCGC TCGCGGCCGC GGAACTGCAC CTCACGGCGT CGGCCATCAG CCACCAGGTG
ACGCGGCTCG AAGCGCACCT GGGCGTGCGC CTGTTCGAGC GCAGCGCGCA CGGCGTGCGC
ATCAGCCCGG CGGGCGAGTC GTACCTGTCG CGCATCGGCC GCGCGCTCTC GGCCATCGCG
GCCGCGACCG AGGACTTGCG GCAGGGCGTC CGCAACAGCC TCTACGTGCA CTCGGCACCG
AGCATCGCGA GCCTGTGGCT GATGGCGCGC CTGCAGGGCT TCGCGCAGGC CTACCCAGAC
ATCTCGCTCA ACCTGTCGTC AGCGCACACA CCCAGCGACT TCGAACTCGG CCAGTCGGAC
ATCGACATCC GCTACGGCGT GCCGAACTGG CCCGACCTGG TGGTCGAGCC GCTGTTCGAA
GAAAGCATCG TGCCGCTGGC GAGCCCGGAG TTCATCCGCG AGCATCGGCT CAAGCGCCCC
GAGCACCTGC TGGGCGTCAA GCTCATCCAG AGCAACGTCA GCGTGGTGCA GTGGGCCGAC
TGGTTTTCGG CGTTCACCGA CCAGCACGCG CCGGAGCGCT TCAGCGTGCG CTTCGACCGG
GCCCAGATGT CGCTGGACGC CGCCACCCAG GGCCTCGGCG TCGCGCTCGA AAGCACCACC
ATCGCCGGCC GGCACATCGC CGAGCGCCGG CTGCGGCCGG TGTTCGGGCT CGACAAGGCG
ATCAAGGTCA AGGCGCACTT CGCCGTCTAC CCGCCGCGCC ACGCCAAGCG GCCGGCGGTG
GAGGCGTTCC TGGCCTGGCT GCACGGCGAG GCGGCAAAAG GCCAGGCGAC CTGA
|
|---|
| Protein sequence | MSYIPPITNL QAFEAVARRR SFALAAAELH LTASAISHQV TRLEAHLGVR LFERSAHGVR
ISPAGESYLS RIGRALSAIA AATEDLRQGV RNSLYVHSAP SIASLWLMAR LQGFAQAYPD
ISLNLSSAHT PSDFELGQSD IDIRYGVPNW PDLVVEPLFE ESIVPLASPE FIREHRLKRP
EHLLGVKLIQ SNVSVVQWAD WFSAFTDQHA PERFSVRFDR AQMSLDAATQ GLGVALESTT
IAGRHIAERR LRPVFGLDKA IKVKAHFAVY PPRHAKRPAV EAFLAWLHGE AAKGQAT
|
|---|
| |