Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4266 |
Symbol | |
ID | 6162242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4773453 |
End bp | 4774676 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 641667043 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001793282 |
Protein GI | 171060933 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCA AGACGCTCCT GATCGCCGCG GCCGGTGCGG TGGCACTGGC CGCCATGCTG GGCTGGGCCT TCGCGCCGCG GCCGGTCGAG GTGGAGATCG CCACCGCCGG CATCGGCCCG TTCGAGACCA CCCTCGACGA GGACGCCCGC ACCCGGCTGC GCGAGCGCTA CGTCGTCTCG GCGCCGCTGG CCGGGCGGCT GCAGCGCGTG ACGCTGCGCG AGGGCGATGC GGTCGAGGCC GGCGCGGTGC TCGCCACGCT GCGGCCGGTG TTGAGCCCGA TGCTCGACGA GCGCACGCTG CGCGAGCAGC AGGCGCGGGT CGGTGCGGCC GAGGCCGGCG TGGCGCAGGC CCGCAGCGGC GTCGGCGCGG CGCAGGTGGC GCTGGAACGC GCCGCCCTGC AACTGCGCCG CACCGAGCAG CTGGCGCAAC AGGGTTTCGT GGCGCCGACC CAGGTCGACA CCGACCGGCT GGCGGTGCAG GCGGCGCAGC AAGGGCTCGA CGCGGCGACC GAGGCGGGAC ACGTCGCCAG CCACGCGCTC GATCAGGCCC GCGCCGCGCT CGGCGCCGTG CGCAGCGCGG GCACCGGCCG GGCCGACGGC GCGCCGTTCG CGCTGCGCGC ACCGCTGTCG GCGCGGGTGC TGAAGGTGCA CCACACCAGC GAGGCGACCG TGGCGCTGGG CGCGCCGCTG ATCGAGCTGG GCGACACCAC GCAGATGGAG ATCGTGGCCG AGCTGCTGAC CACCGACGCG CTGCTGGCGC GCCCCGGCAG CGCCGTGCGC ATCGAGCGCT GGGGCGGCCC CGCCGTGCTG CAGGGCCGGG TGCGACGCAT CGAGCCGGCG GCGTTCACCA AGGTGTCGGC GCTGGGCGTG GAGGAGCAGC GGGTCAACGT GCTGATCGAC ATCACCAGCC CGGGCGCCGA GTGGGCCGCG CTGGGCGACG GCTACCGCGT GGGCGTGCGC ATCGTCACGC GCAGCGAGAG CGCGGTGCTG CGCGTGCCGG TGAGCGCGGT GTTCCCGCTG CCGGCGGGTG AGGCTGCGGC GAGCCCGGGC CACGCGGTGT TCGTGGTCGA TGCCGGCCAC GCACGGCTGC AGCCGGTCAA GGTGGCCGAG CGCAACGGCA GCCTGGCGTG GATCGAACAA GGCCTGGCGG CCGGCGCCGA GGTGATCGTC TACCCGCCCG CGAGCGTGGC GGACGGCGTG CGGGTCAAGC GGCGCGGCGT CTAG
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Protein sequence | MNRKTLLIAA AGAVALAAML GWAFAPRPVE VEIATAGIGP FETTLDEDAR TRLRERYVVS APLAGRLQRV TLREGDAVEA GAVLATLRPV LSPMLDERTL REQQARVGAA EAGVAQARSG VGAAQVALER AALQLRRTEQ LAQQGFVAPT QVDTDRLAVQ AAQQGLDAAT EAGHVASHAL DQARAALGAV RSAGTGRADG APFALRAPLS ARVLKVHHTS EATVALGAPL IELGDTTQME IVAELLTTDA LLARPGSAVR IERWGGPAVL QGRVRRIEPA AFTKVSALGV EEQRVNVLID ITSPGAEWAA LGDGYRVGVR IVTRSESAVL RVPVSAVFPL PAGEAAASPG HAVFVVDAGH ARLQPVKVAE RNGSLAWIEQ GLAAGAEVIV YPPASVADGV RVKRRGV
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