Gene Lcho_4266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4266 
Symbol 
ID6162242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4773453 
End bp4774676 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content77% 
IMG OID641667043 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001793282 
Protein GI171060933 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCA AGACGCTCCT GATCGCCGCG GCCGGTGCGG TGGCACTGGC CGCCATGCTG 
GGCTGGGCCT TCGCGCCGCG GCCGGTCGAG GTGGAGATCG CCACCGCCGG CATCGGCCCG
TTCGAGACCA CCCTCGACGA GGACGCCCGC ACCCGGCTGC GCGAGCGCTA CGTCGTCTCG
GCGCCGCTGG CCGGGCGGCT GCAGCGCGTG ACGCTGCGCG AGGGCGATGC GGTCGAGGCC
GGCGCGGTGC TCGCCACGCT GCGGCCGGTG TTGAGCCCGA TGCTCGACGA GCGCACGCTG
CGCGAGCAGC AGGCGCGGGT CGGTGCGGCC GAGGCCGGCG TGGCGCAGGC CCGCAGCGGC
GTCGGCGCGG CGCAGGTGGC GCTGGAACGC GCCGCCCTGC AACTGCGCCG CACCGAGCAG
CTGGCGCAAC AGGGTTTCGT GGCGCCGACC CAGGTCGACA CCGACCGGCT GGCGGTGCAG
GCGGCGCAGC AAGGGCTCGA CGCGGCGACC GAGGCGGGAC ACGTCGCCAG CCACGCGCTC
GATCAGGCCC GCGCCGCGCT CGGCGCCGTG CGCAGCGCGG GCACCGGCCG GGCCGACGGC
GCGCCGTTCG CGCTGCGCGC ACCGCTGTCG GCGCGGGTGC TGAAGGTGCA CCACACCAGC
GAGGCGACCG TGGCGCTGGG CGCGCCGCTG ATCGAGCTGG GCGACACCAC GCAGATGGAG
ATCGTGGCCG AGCTGCTGAC CACCGACGCG CTGCTGGCGC GCCCCGGCAG CGCCGTGCGC
ATCGAGCGCT GGGGCGGCCC CGCCGTGCTG CAGGGCCGGG TGCGACGCAT CGAGCCGGCG
GCGTTCACCA AGGTGTCGGC GCTGGGCGTG GAGGAGCAGC GGGTCAACGT GCTGATCGAC
ATCACCAGCC CGGGCGCCGA GTGGGCCGCG CTGGGCGACG GCTACCGCGT GGGCGTGCGC
ATCGTCACGC GCAGCGAGAG CGCGGTGCTG CGCGTGCCGG TGAGCGCGGT GTTCCCGCTG
CCGGCGGGTG AGGCTGCGGC GAGCCCGGGC CACGCGGTGT TCGTGGTCGA TGCCGGCCAC
GCACGGCTGC AGCCGGTCAA GGTGGCCGAG CGCAACGGCA GCCTGGCGTG GATCGAACAA
GGCCTGGCGG CCGGCGCCGA GGTGATCGTC TACCCGCCCG CGAGCGTGGC GGACGGCGTG
CGGGTCAAGC GGCGCGGCGT CTAG
 
Protein sequence
MNRKTLLIAA AGAVALAAML GWAFAPRPVE VEIATAGIGP FETTLDEDAR TRLRERYVVS 
APLAGRLQRV TLREGDAVEA GAVLATLRPV LSPMLDERTL REQQARVGAA EAGVAQARSG
VGAAQVALER AALQLRRTEQ LAQQGFVAPT QVDTDRLAVQ AAQQGLDAAT EAGHVASHAL
DQARAALGAV RSAGTGRADG APFALRAPLS ARVLKVHHTS EATVALGAPL IELGDTTQME
IVAELLTTDA LLARPGSAVR IERWGGPAVL QGRVRRIEPA AFTKVSALGV EEQRVNVLID
ITSPGAEWAA LGDGYRVGVR IVTRSESAVL RVPVSAVFPL PAGEAAASPG HAVFVVDAGH
ARLQPVKVAE RNGSLAWIEQ GLAAGAEVIV YPPASVADGV RVKRRGV