| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4257 |
|---|
| Symbol | |
|---|
| ID | 6163653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4764629 |
|---|
| End bp | 4767652 |
|---|
| Gene Length | 3024 bp |
|---|
| Protein Length | 1007 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641667034 |
|---|
| Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| Protein accession | YP_001793273 |
|---|
| Protein GI | 171060924 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACC TGCAACGCCA GGATATGTCC CTGTTTTCAG ACCTTGCCGA AGCCCGTGTC
AACGGTGCCT CCCGCGGCGC GGCGCGCGCC TTGCCGGAAC AACCTATCAG CGCCGAAGTG
CTGATCGAGA AATATGCCAA GGGCGACGAA TCGAGCATCG AGCAGGTGCG CCGCCGTGTC
GCCGCCGCGC TCGCCTCGGT CGAGGCACCC GAGGCGCGCG AGCTCTGGAC CGAGCGTTTC
CTGGCCGCCC AGGAGCGCGG TTTCGTGCCC GCCGGGCGCA TCGCCTCGGC CGCCGGCACC
ACGCTCAGCG CCACGCTGAT CAACTGCTTC GTGCAGCCGG TGGGCGACTC GATCGCCGAG
CCCGAAGAAG GCTTCCCGGG CATCTACACC GCGCTGACCG AAGCGGCCGA AACGATGCGC
CGCGGTGGCG GCGTCGGCTA CGACTTCAGC CGCATCCGCC CCTACGGCGC CTGGGTCGGC
AGCACGCAGA GCCACGCCAG CGGCCCGGTC AGCTACATGC GCGTGTTCGA CCGCAGCTGC
GAGACGGTCG AATCCGCCGG CAGCCGCCGC GGCGCCCAGA TGGGCGTGCT GCGCTGCGAT
CACCCGGACG TCGAGGCCTT CATCCACGCC AAGGACAAGG GCGACCTGAA GAACTTCAAC
ATCTCGGTCG GCGTGACCGA CGTCTTCATG AAGGCGGTCG AGGCCGACAC CGACGTCGAC
CTGGTGCACA AGGCCGAGCC CGGCGAGAAG CAGAAAGCCG CCGGCGCCCG CCAGCGCGCC
GATGGCCTGT GGGTCTACCG CAGCGTGCGC GCGCGCGACC TGTGGGACCA GATCATGCGG
TCGACCTACG ACCACGCCGA ACCGGGCGTG CTGTTCCTGG ACCGCATCAA CCAGGACAAC
AACCTCAGTT ACTGCGAGAC CATCGCGGCG ACCAACCCGT GTGCCGAACA ACCACTGCCG
CCCTACGGCT GCTGCTGCCT CGGCTCGGTC GACCTGACGC ACTTCGTGCA GCGCCCGTTC
GAGTCCGACG CCTCGTTCGA CGACGCCGCC TTCGCCGAGG TCTGCGCGAC CGCCACCCGC
ATGCTCGACA ACGTGCTCGA CGCCACCGTC TGGCCGTTGC CCGCGCAGCA GCAGGAGGCC
GCCAACAAGC GCCGCGTCGG CCTCGGTTTC ACCGGCCTGG GCGACGCGCT GATCATGCTC
GGCCTGCGCT ACGACACGCC GGCCGCGCGC GCGATGGCCA CGCACATCAG CGAGGTCATG
CGCGACGCCG CCTACATCGC GTCGAGCGAC CTGGCGCAGG AGCGCGGTGC GTTCCCGCTC
TTCAACGCCG ATCTCTACCT GAGTGGCAAC AGCTTCGCCT CGCGCCTGCC CGCGGCCGTC
AAGGAGCACA TCCGCGTCAA CGGCCTGCGC AACTCGCACC TGCTGTCGAT CGCGCCCACC
GGCACCATCA GCCTGGCCTT TGCCGACAAC GCCTCCAACG GCATCGAGCC GCCGTTCAGC
TGGACCTACA CCCGCAAGAA GCGCGAGGCC GACGGCACGT TCAAGGAGTT CGCGGTCGAG
GACCACGCCT GGCGCCTGTA CCGCCACCTC AAGGGCGCCG ACGCGCCGCT GACCGACGCC
TTCGTCACCG CGCTCGAGAT GAGCGCCGAG GCGCACGAAT CGATGGTGGC GGCGGTCGCG
CCGTGCATCG ACACCTCGAT CAGCAAGACC GTCAACGTGC CGGCCGACTA CCCGTACGAG
GACTTCCAGG GCCTCTACAT GGCGGCCTGG AAATCCGGCC TCAAGGGCCT GGCGACGTAT
CGTCCGAACA GCGTGCTGGG CTCGGTGCTG AGCGTCACAC CCACCGTGCC CGTCGTCGCC
GAAACCGCCG CCACGCCGCA GCCGTTGACC GTGCCCGTCA GCCTGGGCAC GCCGCTCGAC
GCCGGCAGCG CCAACCAGCG CCTGCGTGTC GACCGCCTGC CGCAGCCGGT GCTCGCCTCG
CTGCGCTGGC CCAGCCGGCC GGACCTGAGC AACGGCAACC CGGCCTGGAG CTACATGATC
CAGCACCCGC ACGGCGACTT CGCGCTGTTC GTCGGCGAGC TGCCGGCCGA GGCCGGCCCC
GACGCCGGCC TGTTCGACAA GACCCTGCCG TTCGAGGTCT GGGTCAACGG CGCCGAACAG
CCGCGCGGCC TGGGCGCGCT GGCCAAGACG CTGTCGATGG ACATGCGTGC CAACGACCCG
AGCTGGCTCA AGCTCAAGCT CGACGCGCTC GCCACCGTCG CCGAAGAGCG CGCCTTCGAC
ATGCCCTTCC CGCCCACCGG CGAGAAGCGC CTGTTCCCCG GCGTGGTGGC GGCCACCGCG
GCGGTGATCC GCTGGCGCTG CGAGCAGCTC GGCGCGCTGC AGGAAGGCGG CCCGACCCCC
GTGCTCGACG CCATGTTCAG CCGCGACGAG CCGCGCACCG GCACCGACGG CACGCTGGCC
TGGGCGGTCG ACATCCACAA CCCGGCCACC GGCGAGGAGT TCACCCTCAC GCTCAAGGAA
GTGACGCTGC CCACGCCCGA AGGTGGCCAC GTCACGCGGC CCTGCGCGAT CGGCTTCGCC
GGCAACTACC CGCGTGCGCT CGACGGCCTG GCGCGCCTGC TGTCGCTCGA CATGCGCGTG
ATCGACCCGG CCTGGATCGG CATGAAGCTG CGCAAGCTGC TCAACGTCGG CGAACCGCTC
GGCCACTTCA TGGCGCCGAT CCCGGGCCAG AAACGCCAGC AGATCTGGCC CAGCACCGTC
GCCTACGTGG CGCGGCTGGT GATCCACCGC TACGCGATGC TGGGCGTGCT GACCGAAGAA
GGCGAGCCCG TCAGCGCGAT GGGCGTGCTG GCCGCACCGC AACGCGCGGT TGCCGCCGGG
GCGTCCTCGG GCGCTGCCGT CAGCGGCGCC GCCAGCGCCC CGATGGCCGG CTCGCCCTGC
CCGGAGTGCG GCAACGCCAC GATGATCCAC AAGGACGGGT GCGATTTCTG CACCAGCTGT
GGCTTCGTGG GTGCGTGTGG TTGA
|
|---|
| Protein sequence | MNDLQRQDMS LFSDLAEARV NGASRGAARA LPEQPISAEV LIEKYAKGDE SSIEQVRRRV
AAALASVEAP EARELWTERF LAAQERGFVP AGRIASAAGT TLSATLINCF VQPVGDSIAE
PEEGFPGIYT ALTEAAETMR RGGGVGYDFS RIRPYGAWVG STQSHASGPV SYMRVFDRSC
ETVESAGSRR GAQMGVLRCD HPDVEAFIHA KDKGDLKNFN ISVGVTDVFM KAVEADTDVD
LVHKAEPGEK QKAAGARQRA DGLWVYRSVR ARDLWDQIMR STYDHAEPGV LFLDRINQDN
NLSYCETIAA TNPCAEQPLP PYGCCCLGSV DLTHFVQRPF ESDASFDDAA FAEVCATATR
MLDNVLDATV WPLPAQQQEA ANKRRVGLGF TGLGDALIML GLRYDTPAAR AMATHISEVM
RDAAYIASSD LAQERGAFPL FNADLYLSGN SFASRLPAAV KEHIRVNGLR NSHLLSIAPT
GTISLAFADN ASNGIEPPFS WTYTRKKREA DGTFKEFAVE DHAWRLYRHL KGADAPLTDA
FVTALEMSAE AHESMVAAVA PCIDTSISKT VNVPADYPYE DFQGLYMAAW KSGLKGLATY
RPNSVLGSVL SVTPTVPVVA ETAATPQPLT VPVSLGTPLD AGSANQRLRV DRLPQPVLAS
LRWPSRPDLS NGNPAWSYMI QHPHGDFALF VGELPAEAGP DAGLFDKTLP FEVWVNGAEQ
PRGLGALAKT LSMDMRANDP SWLKLKLDAL ATVAEERAFD MPFPPTGEKR LFPGVVAATA
AVIRWRCEQL GALQEGGPTP VLDAMFSRDE PRTGTDGTLA WAVDIHNPAT GEEFTLTLKE
VTLPTPEGGH VTRPCAIGFA GNYPRALDGL ARLLSLDMRV IDPAWIGMKL RKLLNVGEPL
GHFMAPIPGQ KRQQIWPSTV AYVARLVIHR YAMLGVLTEE GEPVSAMGVL AAPQRAVAAG
ASSGAAVSGA ASAPMAGSPC PECGNATMIH KDGCDFCTSC GFVGACG
|
|---|
| |