Gene Lcho_4247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4247 
Symbol 
ID6161024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4757232 
End bp4758209 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content73% 
IMG OID641667024 
Producthypothetical protein 
Protein accessionYP_001793263 
Protein GI171060914 
COG category[S] Function unknown 
COG ID[COG4984] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.990494 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTTC CTCTGGCCCT TCATGAACTG GCCGCCCGGC ACCGGCTCGA TGCCCCCGCG 
CTGCGGCGGC TCGGGCAGCT CGCCGGCCTC GAGCAAGCAC ACGAGGCGCT GAGCCGCTGG
CTGCCACGCG GGGTGGCAGC ACTGGCCGCC GTGCTGCTGG GCAGCGGCCT GGTCTTCTGG
GTCGCCGCCA ACTGGGATCT GCTCGGCCGT GTCGGCCAGT TCGCGCTGCT GCAGGCGGCC
GTGGTGCTGG CGATCGGCGC CACCCTGTGG CGCGGCCTGC AGCGGCTGCC GGCCGCGCTG
CTCGCGCTGC TGGGCATCGG CGGGCTGTTC GCCTACTTCG GCCAGACCTA CCAGACCGGC
GCCGACGCCT GGCAGCTGTT CGCGCTCTGG GCGGCGCTGG CGGTGCCGCT GGGCCTGGCG
CTGCGCAGCG ATCTGCTGTG GTCGGCCTGG GTGCTGGTGG CGATGACGGC GATCGCGCTG
TGGCTGCAGG CCCACATCAG CCCGGGGTTC GAGACGCAGG CACGCGATCT GCCGATCTGG
CTGACCGGCT GGTCCGGTGC CGTGCTGCTG GCGGTGCTGA TGTCGCCACC GATCGGTGGG
CGGCTCGGTG CCGGCAAGCG GGCCCGGCGC GTGGCGGTGG CCTTCGCGAC CGTGCTGGTG
GCCGGCGGCG CCCTGTTCGG GCTGTTCCAG AGCCCGGTGG CCTGGCCGTA CCCGATCGGC
CTGCTGCTGT TGGCCGCGGC GGCGGCCCAG CTGTATCGGG CGCGCAGCTT CGACCTCGCC
CTTCTCGGCT TCGTCGCGCT GGCGCTGGAC GTGCTGCTGC TGGCCGGCCT GTCGCGCGGG
CTCTATCAGA TGGACGAGCG CAACGTGATC AGTCAGATGC TGCTGATCAC GGTCGCGTCG
GCGCTGCTGC TCTCGCTGAC CGTCAAGCTG GTGCTGCAAC GGGCCCGCGC CGTGCAGCAG
GAGTCGCACC ATGTCTGA
 
Protein sequence
MDLPLALHEL AARHRLDAPA LRRLGQLAGL EQAHEALSRW LPRGVAALAA VLLGSGLVFW 
VAANWDLLGR VGQFALLQAA VVLAIGATLW RGLQRLPAAL LALLGIGGLF AYFGQTYQTG
ADAWQLFALW AALAVPLGLA LRSDLLWSAW VLVAMTAIAL WLQAHISPGF ETQARDLPIW
LTGWSGAVLL AVLMSPPIGG RLGAGKRARR VAVAFATVLV AGGALFGLFQ SPVAWPYPIG
LLLLAAAAAQ LYRARSFDLA LLGFVALALD VLLLAGLSRG LYQMDERNVI SQMLLITVAS
ALLLSLTVKL VLQRARAVQQ ESHHV