Gene Lcho_4238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4238 
Symbol 
ID6161127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4748123 
End bp4749034 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content71% 
IMG OID641667015 
Productaminotransferase class IV 
Protein accessionYP_001793254 
Protein GI171060905 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01121] D-amino acid aminotransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGCAA ACCCGTCAGC CCTCCCCGGT CTGCCCTGCT ACCTGAACGG CCAGTGGTTG 
CCGCTCGAGC AGGCCCAGGT GCCGGTGCTC GACCGCGGCT TCATGTTCGG CGACGGCGTC 
TACGAGGTGG TGCCGGTCTA CGGCGGGCGG CTGTTCCGCT TCGACGAACA CATGGAGCGG 
CTCGAGCGCT CGCTGCACGC GGTGCGCATC GCCAACCCGT GCTCGCGCGA GGACTGGCTG 
GCACTGATGC GCCAGCTGGT CGAGCGGGTC GGCGCGGCCA GCGGCAGCAC CGAGCAGCTG 
CTCTACCTGC AGATCACGCG TGGCGTGGCG CCACGCGCCC ATCCGATGCC GGCCGGCCTC 
GCGCCGACCG TCCTCATGAT GAGCCAGCCG CACGCCGCGC CGAGCGCCGA GCTGCGCCAC 
CGCGGCCTGG CCTGCATCAG CCACCATGAT TTCCGCTGGG AGCGCGGCGA CATCAAGTCG 
ATCTCGCTGC TCGGCAACGT GATGGCGCGC CAGCTCGCGG TCGATCACGA CGCCGACGAG 
ACCATCCTGC TGCGCGACAC GCCGCACGGC CCGGTGGTCA GCGAAGGCTC GTCGAGCAAC 
GTCTGGATCG TGCTCGAGGG CGCGCTGATC GGCGTGCCGC CTTCGGCCCA CACGCTGGCG 
GGCGTGCGCA TCGAGCTGCT GCGCGAGCTG TGCGAGGACG AAGGCATCGC CTGCCACATG 
CGCCCGATCG CCGAGGCCGA GCTCTACGCC GCCGACGAGA TCCTGCTGAG CTCGGCCGGC 
CGCGAGGTGC TGCCGGTGAC GCGGCTCGAC GGCGAATCGG TCGGCCACGG TGCCGGCCGC 
GGCAAACCCG GCCCGGTCTA CGCCCGCCTG CACGAGGCCT ATCAGCGCGC CAAGCAGGAA 
CAGTCGCTCT GA
 
Protein sequence
MHANPSALPG LPCYLNGQWL PLEQAQVPVL DRGFMFGDGV YEVVPVYGGR LFRFDEHMER 
LERSLHAVRI ANPCSREDWL ALMRQLVERV GAASGSTEQL LYLQITRGVA PRAHPMPAGL 
APTVLMMSQP HAAPSAELRH RGLACISHHD FRWERGDIKS ISLLGNVMAR QLAVDHDADE 
TILLRDTPHG PVVSEGSSSN VWIVLEGALI GVPPSAHTLA GVRIELLREL CEDEGIACHM 
RPIAEAELYA ADEILLSSAG REVLPVTRLD GESVGHGAGR GKPGPVYARL HEAYQRAKQE 
QSL