| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4226 |
|---|
| Symbol | |
|---|
| ID | 6160686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4737426 |
|---|
| End bp | 4738232 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641667003 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001793242 |
|---|
| Protein GI | 171060893 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.219808 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACTCGC CCGGCCCGGC GAACGAGAAG CTGGCGCAGC CGGCCCGGGC GGGCCGCAAC
GGCGCGTCGA GCCGGCTCGA AGCCGACGGC CTCGAAAAGA GCTACGGCGC GCGCAAGGTG
GTCAAGGACA TCCACCTGGC CGTCAACAGC GGCGAGGTGG TCGGCCTGCT GGGCCCCAAC
GGCGCGGGCA AGACCACCAG CTTCTACATG CTGGTCGGCC TGGTGCGCGC CGATGCCGGA
CAGATCCGCA TCGACGGCGC GCCGGTGCAG CGCCTGCCGA TCCACCAGCG CGCCCGCATG
GGGCTGTCGT ACCTGCCGCA GGAGGCGTCG ATCTTCCGGC GCCTGACGGT CGAGGAGAAC
ATCCGCGCCG TGCTCGAACT GCAGCAGGAC GCCGAAGGCC GCCGCTACAG CGCGCAGCGC
ATCGAGCAGA TGCTCGACGG CCTGCTGGCC GACCTGTCGA TCGAGAAGCT GCGCGAATCG
CCCGCGCCGG CGCTGTCGGG CGGTGAGCGC CGACGCGTCG AGATCGCCCG TGCGCTGGCC
ACGCAGCCGC GCTTCATCCT GCTCGACGAG CCGTTTGCCG GCGTCGACCC GATCGCGGTG
CTCGAGATCC AGCGCATCAT CGGTTTCCTC AAGGCGCGTG GCATCGGCGT GCTGATCACC
GACCACAACG TGCGCGAGAC GCTGGGCATC TGCGACCGCG CCTACATCAT CAGCGAAGGC
CGGGTGCTGG CCGAAGGCAC GCCCGCGGCG ATCGTCGAGA ACCCGGACGT CCGCAAGGTC
TACCTCGGCG AACATTTCCG CATGTAA
|
|---|
| Protein sequence | MNSPGPANEK LAQPARAGRN GASSRLEADG LEKSYGARKV VKDIHLAVNS GEVVGLLGPN
GAGKTTSFYM LVGLVRADAG QIRIDGAPVQ RLPIHQRARM GLSYLPQEAS IFRRLTVEEN
IRAVLELQQD AEGRRYSAQR IEQMLDGLLA DLSIEKLRES PAPALSGGER RRVEIARALA
TQPRFILLDE PFAGVDPIAV LEIQRIIGFL KARGIGVLIT DHNVRETLGI CDRAYIISEG
RVLAEGTPAA IVENPDVRKV YLGEHFRM
|
|---|
| |