| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4221 |
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| Symbol | |
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| ID | 6163893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4731800 |
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| End bp | 4733821 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666998 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001793237 |
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| Protein GI | 171060888 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.114411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAC GCAAGGAACT CTGGTTCGGC TTCTCGCTGA TGGCGATCAT CCTGATCACG
GTCGCCATCT TCACCCCCTG GGCAGGCTTC TTCGACGGCC ACCTGAGCCG CGAGGACTTG
GGTGCGCTGG GCCTGCTGAT GCTGGGGCTG ATCGTGGTGG CCATCATGCT GGGCTTCCCG
ACCGCGTTCA CGCTGATGGG CATGGGCGTG TTCTTCGGCT GGCTCGCCTA CCGCAGCGTC
AACCCCGATC TGGCCGGCCA GCAGATCCTC GACCTGATGG TGCAGCGCGC CTACTCGGTG
ATGTCCAACG ACGTGCTGAT CGCGATCCCG CTGTTCGTGT TCATGGGCTA TCTGGTCGAA
CGCGCCAACC TGATCGAGAA GCTCTTCAAG AGCCTGCACC TGGCGCTGGC GCGCCTGCCC
GGTGCGCTGG CGGTGGCCAC CATCGTGACC TGCGCGATCT TCGCCACCGC CACCGGCATC
GTCGGCGCGG TGGTCACGCT GATGGGCCTG CTGGCGCTGC CGGCGATGCT GCGCGCGGGC
TACGGCGTGC AGCTCGCCGC GGGTGCCATC ACGGCCGGCG GCTGCCTGGG CATCCTGATC
CCGCCGTCGG TGCTGCTGAT CGTCTACGGC GCCACCGCCG GCGTGTCGGT GGTCAAGCTG
TACGCCGGGG CGTTTTTTCC CGGCCTCATG CTGGCGGGCC TGTATGTCAT CTACGTGGTC
GTGATCGCCA AGCTGAAGCC GCACCTGGCG CCGCCGCTGT CGATGAGCGA ACGCGAAGTC
GCCCTGCCGC CGATCTCGCA GACGCTTTCC TCGCGTGGAA GCAACGCCAT CAGCGGCCTG
TTCGGCGCGC TCAAGGGCGC CGCGCTGCCC AAGGGCGCGG TGGCCGGGCA GCTGTTCGTC
GCCCTGCTGC CGGCGATCTC GATCGTCGTC CTGCTGGCCT TCATGTACGG CAGCGCCACG
GCCCCGGTGG CCAGCGTCGA CACCACCGGC CTGGTGCAGG CGGGCAGCTC GTTCGACTCG
GCCGGCGACA CGCCCACCGA GCTCGGCGGA CTCCAGGAGC CGCCCGCCGA ATCCGGCGGC
TTGCAGGAAC CGCCCAGCGA ATCAACCGGC CTGCAGGAGC CGCCGAGCGA CGACCTGAAG
GAACCGGCCG GCGCAGCCCC GGCCACGGCA CCCGTCGCTG CCGCAGCCGA AGCGCCGCCG
GCGCCCGAGC GTGTGCCGGC GGGCACCTGG TACTGGATCG TCTTCGGTGT CGGCATGGCC
GCCCTGTTGC TGACCAACGT GCTGATGAGC TGGCAGCGGC TCGAGATCTT CAAGATGCTG
CTGCAGTCGT TCTTCCCGCT GGCGGTGATG ATCGTCGCGG TGCTGGGCTC GATCGTCTTC
GGCCTGGCCA CGCCGACCGA GGCGGCCGCG GTCGGCGCGC TCGGCGGCCT GCTGCTGGCC
GGCGCCTACC GCTATGTCGC GGCGCGACAG GCCAGGGCAC CGTCGGCGAT GGGGCAGACG
ATCCGCGACC TGGGCGGCAT CATCAAGGAG TCGTCGTTCC TGACCGCCAA GACCAGCGCG
ATGGTGTGCT GGCTGTTCGT CGGCTCGTCG ATCTTCTCGG CCGCGTTCGC GCTGCTGGGC
GGGCAGGAGC TGATCGAGCA ATGGGTGCTG TCGCTGGGTC TGACGACGCT GCAGTTCATG
CTGCTGTCGC AGTTCATCAT CTTCATCCTG GGCTGGCCGC TGGAATGGAC CGAGATCATC
GTGATCTTCA TGCCCATCTT CATCCCGCTG CTGCCCAAGT TCGGTGTCGA TCCGCTGTTC
TTCGGGCTGC TGGTGGCGCT GAACCTGCAG ACCGCCTTCC TGAGCCCGCC GGTGGCGATG
GCGGCGTTCT ACCTGAAGGG CGTCAGCCCG CCGCACGTGA CGCTGAACCA GATCTTCGCC
GGCATGCTGC CGTTCATGGG GATCCAGGTC TTCGCGCTGT TCCTGCTGTA CCAGTTCCCG
GCCATCGGCC TGTGGCTGCC GCAGGTGGTG TACGGGCGCT GA
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| Protein sequence | MKIRKELWFG FSLMAIILIT VAIFTPWAGF FDGHLSREDL GALGLLMLGL IVVAIMLGFP
TAFTLMGMGV FFGWLAYRSV NPDLAGQQIL DLMVQRAYSV MSNDVLIAIP LFVFMGYLVE
RANLIEKLFK SLHLALARLP GALAVATIVT CAIFATATGI VGAVVTLMGL LALPAMLRAG
YGVQLAAGAI TAGGCLGILI PPSVLLIVYG ATAGVSVVKL YAGAFFPGLM LAGLYVIYVV
VIAKLKPHLA PPLSMSEREV ALPPISQTLS SRGSNAISGL FGALKGAALP KGAVAGQLFV
ALLPAISIVV LLAFMYGSAT APVASVDTTG LVQAGSSFDS AGDTPTELGG LQEPPAESGG
LQEPPSESTG LQEPPSDDLK EPAGAAPATA PVAAAAEAPP APERVPAGTW YWIVFGVGMA
ALLLTNVLMS WQRLEIFKML LQSFFPLAVM IVAVLGSIVF GLATPTEAAA VGALGGLLLA
GAYRYVAARQ ARAPSAMGQT IRDLGGIIKE SSFLTAKTSA MVCWLFVGSS IFSAAFALLG
GQELIEQWVL SLGLTTLQFM LLSQFIIFIL GWPLEWTEII VIFMPIFIPL LPKFGVDPLF
FGLLVALNLQ TAFLSPPVAM AAFYLKGVSP PHVTLNQIFA GMLPFMGIQV FALFLLYQFP
AIGLWLPQVV YGR
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