Gene Lcho_4218 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4218 
Symbol 
ID6163890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4728679 
End bp4729797 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content73% 
IMG OID641666995 
ProductN-acetylglucosamine-6-phosphate deacetylase 
Protein accessionYP_001793234 
Protein GI171060885 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1820] N-acetylglucosamine-6-phosphate deacetylase 
TIGRFAM ID[TIGR00221] N-acetylglucosamine-6-phosphate deacetylase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0220428 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCCAC CGAGCCGCAT CGACGGCGAC ATCCTCACCC CGAACGGCTT CGTGCGCGGC 
GCACTGCATC TGCAGCACGG GCGCATCGAC CGCATCGACG GCACCCCGCT CGACACCGCC 
GATGCGGGCC AGGGCGGCCA CGCCATCGTG CTGCCCGGCT TCGTCGACCT GCACGTGCAC 
GGCGCCGGTG GCCGCGACAT CATGGACGCC GGCGAGGCCG TTGCCACCGT GGCGCGCACC 
CACGCGCGGC ACGGCACCAC GGCGCTGCTG GCGACCACGA TGACGGCGCC GCTCGACGAG 
ATCCGCACGG CGCTGGCGGC CATCGCGCCG GCCGTCGCGC AGCGCCCGAA CGGCGGCGCG 
CGCGTGCTCG GCGTGCACCT CGAAGGGCCG TACATCAACA CCGCCCGGCT CGGTGCGCAG 
CCCGACTTCG CGCGGGAGCT GACGCTCGAT GAAGTGGCCG CGCTGCATGC GATCGCGCCG 
ATCCGGCTCA TCACGCTGGC ACCCGAGGTG GACGGCCATC TGGCGCTGAT CGCACCGCTG 
CGTGCGGCCG GCCACATCGT GCAGATCGGC CACAGCAACG GCAGCTACGA GGACGGCGTG 
GCGGCGCTGC GCTGCGGCGC GGCCGGTTTC ACGCACCTGT TCAACGCCAT GAGCGCGCTG 
CACCACCGCG CGCCCGGCAT GGTCGGCGCA GCACTCGCGC ATGCGCAGCA CGCCGAGATC 
ATCCCGGACC TGCTGCACGT GCACCCCGGC GCGATCCACG CCGCGCTGCG CGCGATTCCC 
GGCCTGTATT GCGTCAGCGA CGCCACCGCT GCCACCGGCA TGCCCGACGG CGACTACCGG 
CTCGGCCGCC ACACCGTTCA CAAGTGCCTG GGCGGCGTGC GCCTGGCCGA CGGCACGCTG 
GCCGGCAGCG CGCTCACGCT CGACCAGGCG CTGCGCAACC TGATGGCGAT CGGCCTGCCG 
CTGGACGAGG CCTCGCGGCG GGTTTCCACC CATGCGGCCG ATTACATCGG CCGCTCCGAC 
CTCGGCCGGC TGCAGGCGGG CGCACTCGCC GACGTGGTGG TGCTCGACGC CGACCTGTCG 
GTGCGGCGGG TGCTGATCGG CGCGGAAGAA GAAAGCTGA
 
Protein sequence
MHPPSRIDGD ILTPNGFVRG ALHLQHGRID RIDGTPLDTA DAGQGGHAIV LPGFVDLHVH 
GAGGRDIMDA GEAVATVART HARHGTTALL ATTMTAPLDE IRTALAAIAP AVAQRPNGGA 
RVLGVHLEGP YINTARLGAQ PDFARELTLD EVAALHAIAP IRLITLAPEV DGHLALIAPL 
RAAGHIVQIG HSNGSYEDGV AALRCGAAGF THLFNAMSAL HHRAPGMVGA ALAHAQHAEI 
IPDLLHVHPG AIHAALRAIP GLYCVSDATA ATGMPDGDYR LGRHTVHKCL GGVRLADGTL 
AGSALTLDQA LRNLMAIGLP LDEASRRVST HAADYIGRSD LGRLQAGALA DVVVLDADLS 
VRRVLIGAEE ES