| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4212 |
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| Symbol | |
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| ID | 6163804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4721828 |
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| End bp | 4724101 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666989 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001793228 |
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| Protein GI | 171060879 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000273127 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACCTCGG CCTGGCGCCT GTGGCCGCGC TCGCTGGTCG GGCGCGTGTT CGCGCTCTAC
ACCGTCACGC TGCTGGCCTT CGTGATCGCC GGGCTCGGGC TGTTCTACCG CTACCAGTTC
GCGGTCGAAC TCGAGGAGGC GCAGCTGCGC GCCGAGGCGC TCAGCGCGGT GATGCTGCCG
ACGATCTCCG ACAGCGCCGT GATCGGCGAC TACGACACCA TCCGCCGCAC CCTCGAGCAC
GCGGTGCACC ACTCGTCGTT CTCGTCGGCC AGCTTCATCG ACCTGCGCGG CGGCGTGGTG
CGCGCGCCGC GCGACGATGC GCCCGACGTG GCGCCGCCGC GCTGGCTGCG TGATTCGGTG
GCCGCGCTGC TCTACGACAC CAACCTGCCG ATCTCGGTGG GCGGGCACGA CTACGGCGTG
CTGCGCCTGA GCTTTGCGCC CGACCGCATC GCCGGGCGCC TGTGGGAGCA GACCCGCATC
GCGCTGGCGC TGGGCCTGGT CTGCGTCATC GGCGGCCTGG CCCTGATCCG CTTTCCGCTG
GTGCGCTGGC TCGGCAAGCT CAGTCGCGTG CAGGCCTTCG ACGAGGCCAT GCGCAGCGGC
CGGGCCGCGC CGGCGATGCT GTCGGCCGAG GAGGCGCCGC TCGAGTTCCG CGAGACCTTC
GAGGTGCTCG GCCGTGCCGC GGCCAGCCTG CAGTCGCAGC GCGCGCAGGC GGCGGTCACG
CTGGGCGCGA TCGCCGATGG CGTCTTCACG CTCGATGGCG AAGGCCGCGT GGTGCTGGCC
AATCCGGCCG CCTGCGCGAT GGCGGGCCGC ACGCTCGAGC AGATGTTCGG CCGCCCGGCC
GCCGAGGTGC TGCCGCAGGT CTACGCCGAC GCGAGCCACC TCGGCCGCTG GACCGGCCGG
CGTGTCACGC TGCGCTGCGA CACCCAGCCC GACGTGGTGG TCGACACCAC GCTGTCGCCG
ATCCTGTCGC CCGACGGGGC CGTGGCGGGT CACGTGCTGG CCTGCCGCGA CATCAGCGAG
CAGTCCGCGC TCGACCAGCG CCTGCGCGCC GAGCTGCGCG CCCGCGAGTC GGCGCTGGTG
GCGCTGCGCC AGGTGCTCGA AGGCCTGACG CCGGGCGCGC AGGCATCGGC CCGGACGGTC
GGCTCCGACG ACCTGGCGGC GATCTCGCTG ATGATCTCCG AGCTCGTCAC CCGGCTGCAG
ATCCGCGGCG AGCAGCTCGA CGCGATCTTC GCGCTGAGCC CGGACGGTTT CGTGTCGTTC
GACTCGCAGC GCCGCGTCAA CTACGTCAGT CCGGCCTTCA CCCGCCTGAC CGGCATGCCC
GAAAGCCAGG CGCTCGGTGC CGACGAGCGC GACATCGAGG CGCAGCTGCG CGCGCAGTGC
GACAGCCCGA TCCCGTGGCG CGGCTTCGAC GCGATGCGCC ACGACCTGCG CCCGCGCGAC
GACGCCAGCG TGCCCGGCCG CGAACTGATC GAGACCGCGC GGCCGGCCCG GCGCGTGCTC
GAGGTGGGGC TGCGCGAGGG CCACACCGAG GCGATCTCGC AGGTGCTGTC GCTGCGCGAC
GTGACGCACG AGCGCGAGGT CGACCAGATG AAGAGCGAGT TCCTGTCGAC CGCCGCGCAC
GAGCTGCGCA CGCCGATGGC CAGCATCTTC GGCTTCGCCG AGCTGATGCT GCGCCGCAAG
CTGTCGGCCG AGAAGCAGCT GGACGTGCTG ACCACCATCC ACCGCCAGAG CCAGCTGATG
ATCTCGATCA TCAACGAGCT GCTCGACCTG GCGCGCATCG AGGCGCGTGG CGGCAAGGAC
TTCGTGCTCG AGACGCTCGA CCTGGCGCTG CTGCTGCGCG AGGTGCTGCA CGACTTCAAG
CCGCCGCAGG ATCGCGCGCT GCCGCTGTTC GAGCGCCGTC TGGAGCCGGT GCCGGTGCTG
GTCGACCGCA ACAAGATGCG CCAGGCGATC GGCAACGTGC TGTCGAACGC GTACAAGTAT
TCGCCCCACG GCGGCGACGT GGTGGTGCGC ATCGTCGCCG GCACCGACCC GGCCGTGCCG
ATGATCGGCA TCGAGGTGCG CGACCACGGC ATCGGCATGA CCGCGGCGCA GCTGGCGCGG
GTCAGCGAGC GGTTCTATCG CGCCGACACC TCGGGCAGCA TCGCCGGCAC GGGTCTGGGC
ATGAGCATCG TCAAGGAGAT CATCGAGCTG CTGGGCGGGC GCATCGCGCT GGCCAGCGAG
CCTGCTCAAG GCACGACCGT GACCCTGTGG CTGCCCTGCA AGCCCGGGCA GTAA
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| Protein sequence | MTSAWRLWPR SLVGRVFALY TVTLLAFVIA GLGLFYRYQF AVELEEAQLR AEALSAVMLP
TISDSAVIGD YDTIRRTLEH AVHHSSFSSA SFIDLRGGVV RAPRDDAPDV APPRWLRDSV
AALLYDTNLP ISVGGHDYGV LRLSFAPDRI AGRLWEQTRI ALALGLVCVI GGLALIRFPL
VRWLGKLSRV QAFDEAMRSG RAAPAMLSAE EAPLEFRETF EVLGRAAASL QSQRAQAAVT
LGAIADGVFT LDGEGRVVLA NPAACAMAGR TLEQMFGRPA AEVLPQVYAD ASHLGRWTGR
RVTLRCDTQP DVVVDTTLSP ILSPDGAVAG HVLACRDISE QSALDQRLRA ELRARESALV
ALRQVLEGLT PGAQASARTV GSDDLAAISL MISELVTRLQ IRGEQLDAIF ALSPDGFVSF
DSQRRVNYVS PAFTRLTGMP ESQALGADER DIEAQLRAQC DSPIPWRGFD AMRHDLRPRD
DASVPGRELI ETARPARRVL EVGLREGHTE AISQVLSLRD VTHEREVDQM KSEFLSTAAH
ELRTPMASIF GFAELMLRRK LSAEKQLDVL TTIHRQSQLM ISIINELLDL ARIEARGGKD
FVLETLDLAL LLREVLHDFK PPQDRALPLF ERRLEPVPVL VDRNKMRQAI GNVLSNAYKY
SPHGGDVVVR IVAGTDPAVP MIGIEVRDHG IGMTAAQLAR VSERFYRADT SGSIAGTGLG
MSIVKEIIEL LGGRIALASE PAQGTTVTLW LPCKPGQ
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