Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4200 |
Symbol | |
ID | 6161385 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4708432 |
End bp | 4709523 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641666977 |
Product | beta-lactamase domain-containing protein |
Protein accession | YP_001793216 |
Protein GI | 171060867 |
COG category | [R] General function prediction only |
COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00000948581 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCAACC TGCTCGAACA CCAACTGGTT TATCCGCTCG CCGATCAGCT GCCCGAACCC GGCCGCACGC TCGAGGTGGC GCCCGGCGTG CGCTGGGTGC GGATGGGGCT GCCGTTTGCG CTCGACCACA TCAACCTCTG GCTGCTGCGT GACCGCATCG ACGGCCGCGA GGGCTGGACC GTGGTCGACT GCGGCATCAC CAACGACGCC ACCCGCGACG CCTGGGAGCA GGTCTTCGCC GACGAACTCG GCGGCCTGCC GGTGCTGCGG GTGATCGTCA CGCACATGCA TCCCGACCAC ATCGGGCTGT CGAACTGGCT GTGCGAGCGC TGGACGACAC CCGAGCATGA ATGCCGCCTC TGGATCAGCG CCACCGACTG GAACGCCGCG CGCATCGCCA GCACCCGCAC CACCGGCTTC GGCGGCGAGG CGGCGGCGGC GTTTTTTGCC AGCCACGGCC TGGTCGATCC CGAGGCCCAG GCCAAGGTGC GCGCGCGTGG CAACTACTAC GGCAGCATGG TGCCGGCGGT GCCGCAGCAG TTCCGCCGCC TGCTCGACGG CATGAAGCTG CAGACGGTGG ACGAGGGGGG TGCTGTCCAC GACTGGTTCT GCCACGCCGG CTACGGCCAC GCGCCCGAGC ACATCAGCCT GCATGCGCCG TCGCTGGGCG TGCTGATCTC GGGCGACATG GTGCTGCCGC GCATCTCCAC CAACATCAGC GTGATCGACA TCGAGCCCGA GGCCGACCCG CTGCCGCTCT ACCTGGCCTC GCTCGACCGC ATGCGCGCGC TGCCGGCACA CACGCTGGTG CTGCCGTCGC ACGGCAAGCC GTTCCGCGGC CTGCACGAGC GCGTCGCGCA ATTGCACGCG CACCACGACG AACGTCTGGC CGAGGTGATG GCCGCCTGCG TGGCGCGGCC GTCGAGCGCG GCCGACATCC TGCCGGTGAT GTTCAAGCGC CCGCTCGACC TGCACCAGAT GACCTTCGCG ATGGGCGAGG CGGTGGCGCA CCTGCATGCG CTGTGGCTGG CCGGGCGGCT CGGACGCAGC CGCGGTGCCG ACGGCGTGTG GCGCTTCGCG CCGGCCGCCT GA
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Protein sequence | MANLLEHQLV YPLADQLPEP GRTLEVAPGV RWVRMGLPFA LDHINLWLLR DRIDGREGWT VVDCGITNDA TRDAWEQVFA DELGGLPVLR VIVTHMHPDH IGLSNWLCER WTTPEHECRL WISATDWNAA RIASTRTTGF GGEAAAAFFA SHGLVDPEAQ AKVRARGNYY GSMVPAVPQQ FRRLLDGMKL QTVDEGGAVH DWFCHAGYGH APEHISLHAP SLGVLISGDM VLPRISTNIS VIDIEPEADP LPLYLASLDR MRALPAHTLV LPSHGKPFRG LHERVAQLHA HHDERLAEVM AACVARPSSA ADILPVMFKR PLDLHQMTFA MGEAVAHLHA LWLAGRLGRS RGADGVWRFA PAA
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