| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4197 |
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| Symbol | gidB |
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| ID | 6161382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4706186 |
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| End bp | 4706842 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666974 |
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| Product | 16S rRNA methyltransferase GidB |
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| Protein accession | YP_001793213 |
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| Protein GI | 171060864 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
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| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00000264563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGCAGCCTG ACCGCGACAC CCTGCTGGCC GGCGCGCAAG CGCTCGGCTG CCCGCTCAGC
GACACGCAGG CCGACGCCCT GCTCGCCTAC CTCGGCCTGC TGCAGCGCTG GAACCAGGTC
TACAACCTGA CCGCCATCCG CGACCCCAAG CAGATGCTGG TGCAGCACCT GCTCGACAGC
TTGGCCGTCA TCGCGCCGCT GAACCGGGTC GCTGGCAGCG CGCCGCTGCG GCTGCTCGAC
GTCGGCAGCG GTGGCGGCTT GCCGGGCGTG GTGATCGCGG TGCTGCGGCC CGATTGCCAG
ATCACCTGCG TCGACACCGT CGCCAAGAAG GCCACGTTCA TCCGCCAGGT CACCGCCGAG
CTGCGGCTGC CGCAGCTGGT GGCGCGCCAT GCCCGCGTCG AGCAGCTGAC CGACGGGCCG
TACAGCGTGA TCACCGCGCG TGCCTTCGCG TCACTGGCCG ATCTGGTCAA GCTGACCCGG
CCGCTGCTTG CGCCGGGCGG CTGCTGGATG GCAATGAAGG GTCAGCATCC GCAGGCCGAG
ATCGACGCGC TGGACGCAGA CATCAACGTG TTTCACGTGG AACAGTTGAG CGTGCCCGGC
CTCGACGCCG AGCGCCGGCT GGTCTGGATG CGTCCGCGCA GCGTCGCTTC AAGCTGA
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| Protein sequence | MQPDRDTLLA GAQALGCPLS DTQADALLAY LGLLQRWNQV YNLTAIRDPK QMLVQHLLDS
LAVIAPLNRV AGSAPLRLLD VGSGGGLPGV VIAVLRPDCQ ITCVDTVAKK ATFIRQVTAE
LRLPQLVARH ARVEQLTDGP YSVITARAFA SLADLVKLTR PLLAPGGCWM AMKGQHPQAE
IDALDADINV FHVEQLSVPG LDAERRLVWM RPRSVASS
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