| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4192 |
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| Symbol | |
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| ID | 6160813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4696258 |
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| End bp | 4702065 |
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| Gene Length | 5808 bp |
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| Protein Length | 1935 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666969 |
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| Product | excinuclease ABC, A subunit |
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| Protein accession | YP_001793208 |
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| Protein GI | 171060859 |
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| COG category | [E] Amino acid transport and metabolism
[L] Replication, recombination and repair |
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| COG ID | [COG0178] Excinuclease ATPase subunit
[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.000700694 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGGTC AGAACGCGCC CCCCACCAGC GTCAAGCGCA CCGGCCTGAT CCGCATCCGC
GGCGCGCGCC AGCACAACCT GAAGAACCTC GACCTCGACA TCCGCACCGG CGAGCTGACG
GTGGTGACGG GCCCCAGCGG CTCGGGCAAG TCGAGCCTGG TGTTCGACAC GCTCTACGCC
GAGGGCCAGC GGCGCTACGT CGAGACCTTC AGCGCCTACG CCCGCCAGTT CCTGGATCGC
ATGGACCGCC CGGCGGTCGA TTCGGTCGAA GGCGTGCCGC CGGCGATCGC GATCGACCAG
ACCAATCCGG TGCGCACGTC GCGCTCGACG GTCGGCACGA TGACCGAGCT GAACGACCAC
CTGAAGCTGC TGTTCGCACG CGCCGCGCAG CTGTTCGATC AGGACACGGC GCAGCCGGTG
CGCGAGGACG ACCCCGACAC GATCTGGGCC GACCTGAAGG CGCGCAGCGA GGCGGCGGGT
GACCCGCGGC TGGTGATCAC CTTCCCGGTC GAGCTGCCGG CCGGCACCAC GCCGGCCGAG
ATCGAGCAGT GGCTCTCGGC CAGCGGTTAC ACGCGGGTGC ACGCCGAACG CGAGGTCGCC
ACGCCGACCG GCCCGCGCAA GGTGCTCGAC GTGGTGGCCG ATCGTTTCCG TTTCAGCGGC
GCCGAGAAGA TCCGCGTCAA CGAGGCGCTG GAAACCGCGC TCAAGCGCGG CGGGCGCTGC
AACGTCTACG TGGTGCCGAC CGACGGTGGC GACGAGCAGG TCTGGCGCTA CAGCCAGGGC
CTGCACTGCC CCGAGTCCGA CCGCCGCTAC AGCCATCCGC AGCCGGCGAT GTTCTCGTTC
AACTCGGCCT TCGGCGCCTG CGAGACCTGC CGCGGTTTCG GCCGCGTGAT CGGCGTCGAC
TTCGGCCTGG TGATCCCCGA CCCGCGCAAG ACACTGCGCG GCGGCGCGAT CAAGCCTCTC
ACCACGCCGG CCTGGAAGGA ATGCCAGGAC GACCTGATCA AGTACGCCGG TGATGCCGGC
ATCCCGCGCG ACAGCGCCTG GGCGCAGTTG AGCGAATCGC AAAAAAGCTG GGTGATCGAC
GGCTCGCCCA ACTGGACTGG CAAGTGGAAC CAGCAGTGGT ACGGCATCAA GCGCTTCTTC
GAGTACCTGG AGAGCAAGGC CTACAAGATG CACATCCGCG TGCTCTTGTC CAAATACCGC
AGCTACACGC CGTGTGGCGA CTGTGGCGGC GCGCGGCTGA AGACCGAGTC GTTGCTGTGG
CGCTTGGGTG AAAAGCAGCA GGCCGACCTC GGTCTGCCAC CGGCCAAACG TTTCATGCCG
GTGGGCGTGA AGTGGTCGCG CGCGCAGCTC GAAGCCTTGC CGGGACTCAG CCTGCACGAC
CTGATGCTGC TGCCGATCGA CCGCATGCGC GTGTTCTTCG ACAAGCTCGA CCTGCCGAGC
CAGATGCTCG ACGACGCGCT GCAACTGCTG CTCGACGAGA TCCGCACCCG GCTCAAGTAC
CTGTGCGACG TCGGCCTGGG TTACCTGTCG CTGGATCGCC AGAGCCGCAC GCTGTCGGGC
GGCGAGGTGC AGCGCATCAA CCTGACGACT GCGCTCGGCA CCTCGCTGGT CAACACGCTG
TTCGTGCTCG ATGAGCCCAG CATCGGCCTG CACCCGCGCG ACATGCACCG CATCAACGAG
GCCATGCTGC GCCTGCGCGA TGCCGGCAAC ACGCTGGTGG TGGTCGAACA CGACCCGGCG
GTGATGCTGG CGGCCGACCG CGTGATCGAC CTCGGCCCCG GCCCCGGCAC GCAGGGCGGG
CGCATCGTCT TCGACGGCAC GCCCGAAGAC CTGAAAGCCG CCGAGACGTT GACCGGCGCC
TACCTCGGCG CGCGCCGCAG CATCGGCCTG GGTCTGATGC GGCCGGTGCT CGACAGCACG
CCGCGGCTGA TCATCGAAGG CGTGCGCGAA CACAACCTGA AGAACATCAG CGTCGAGTTC
CCGCTGCAGC GGCTGGTCTG CGTCACGGGG GTCAGCGGCT CGGGCAAGTC GACGTTGATG
CAGGACGTGC TCTACCCCGC GCTGGCGCGC CACTTCGGCC AGGCGTCCGA GTCACCCGGC
GAACACGACC GCCTGCTCGG CGCCGACTGG ATCAGCGACG CCGTGTTCGT CGACCAGAGC
CCGATCGGCA AGACCGCGCG GTCCAACCCG GCCAGCTATG TCGGCGCCTT CGACACCGTG
CGCGACATCT TCGCCGCACT GCCGGCGGCG CAGCAGCGCA ACTACACCGC CGGCATGTTC
AGCTTCAACG CCGGCGACGG CCGCTGCCCG ACCTGCGGCG GCTCGGGCTT CGAACACGTC
GAGATGCAGT TCCTGTCCGA CGTCTACCTG CGCTGCCCGG ATTGCGACGG CACGCGTTAC
CGGCCCGAAC TGCGCGAGGT CAAGGTCGAG CGGCTCGGCA AGTCGCTCAG CATTTCCGAC
GTGCTCGAAC TGACCGTCGC CGACGCGGTG CGCCTGTTCG CCGACGACCG CGAGGTGGTG
CGCGCACTGC AGCCGCTGGC GGACGTCGGG CTGGACTACG TGAAACTGGG TCAGCCAGTG
CCCACTCTCT CGGGTGGCGA GGCCCAGCGC CTGAAGCTGG CTGGCTTCCT GGCCGAAGCG
GCCAAGTCCG GCAGCGCCAG CAAGCAGAAA CTGGCGCGCA AGGGCACGCT GTTCCTGTTT
GACGAGCCGA CCACCGGCCT GCATTTCGAC GACATCGCCA AGCTGATGCG GGCCTTCCGC
AAGCTGCTCG AAGCGGGGCA CAGCCTGCTG GTGATCGAGC ACAACCTCGA CGTGGTGCGC
GCGTCCGACT GGATCGTCGA CCTCGGCCCC GAAGGTGGCG AAGCCGGCGG CGAGCTGGTC
GCCGAAGGCA CACCCGCCGA CCTGCGCGCG CACCCGACCA GCCACACCGG CCAGTCCCTG
CGCGAGTATG ACTTGAGCCT GGGCACCGGC GGCATCGCGG TCGAGGAGGG CCGGCCGCTG
CAATGGGTGG TGAAGGCGCG ACGCGACGAG GCCAAGCGCG CAGTTGGCAA CATCGCCGAC
GAGATGATCC AGATCGTCAA CGCCCGCGAG CACAACCTCA AGGGCCTGAG CGTCAACATC
CCGCGTGGCA AGTTCAGCGT CGTCACCGGC GTCAGCGGTT CGGGCAAGAG CACGCTGGCC
TTCGACATCC TGTTCAACGA AGGCCAGCGG CGTTACCTCG AATCGCTCAA CGCCTACGCG
CGCAGCATCG TGCAGCCGGC CGGGCGGCCG GAGGTCGATG CGGTCTACGG CATCCCGCCG
ACGGTGGCGA TCGAGCAGCG CCTGAGCCGT GGCGGGCGCA AGAGCACGGT GGCGACGACC
ACCGAGGTGT GGCATTTCCT GCGGCTGCTC TACGTCAAGC TGGGCACCTT GTACTGTCCG
AAGTGCAGCG ATTTCCACGC CCCGCACGGC GATGTCGCGC CCGGCCAGGA CCCGGACGGC
TGGGTGGCGG TGCGCCCGCA GACGCCCGAA CAGATCGCCG CGCAGATGCT GCGTGCGCCG
GAGGCCGGCG GCTACCGCGG CCAGCACATC GGCCTGCTCG CGCCGCTGGT GGTGAACCGC
AAGGGCGTCT ACACCGACCT CGCCAAGTGG GCCAAGGGCA AGGGTTACAC CCACCTGCGG
GTCGATGGCG AGTTCCTGCC GACCGACAAG TGGCCCAAGA TCGACCGCTA CAAGGAGCAC
ACCATCGAGC TGCCGGTGGC CGACCTGATC GTCGAGGTCG ACAACGAGCC GCTGCTCAAG
GCCAAGCTGG CCGAGGCGCT CGAACACGGC AAGGGCGTGC TGCACCTGCT CACTCCCTTG
AAGGGACTCA AGACCGCGAT GGCGGCGGGC GAGAGCGGGC GCATCGGCCG CACCCAGGTG
TTCTCGATCA AGCGCGCCTG CCCGCAATGC GGCACGAGCT ACCCCGAGCT GGACCCGCGC
ATGTTCAGCT ACAACAGCAA ACACGGCTGG TGCGTGGACT GCGTCGGCAC CGGGCTGACC
CTGACCCGCG AGCAGCGCAA GGCGCTCGAC GACACCCAGC AGGACGACGA CAACAAGGGC
CGCGAGAAGA CCTTCGCCGA GCCCGAGGTC GAGGACCTGG TCGACGCGCC GTGCGGCACC
TGCCACGGCG CGCGGCTCAA CCCGGTGTCG CAGGCGGTGC GCTTTCGCGG CGAGTCGATC
GCGGCGCTGG CGGCGCTGTC GGTCAACGAC GCGGCGCGCT GGGTCGCCAG GCAGAAACTC
GATGGCCGCG AAGGCGCGAT CGCGCGCGAC GTGGTCAGCG AGATCAGGAG CCGGCTGAGC
TTTCTCGACG AAGTCGGCCT CGGCTACCTG ACGCTCGATC GCGCCGCGCC GACGCTGAGC
GGCGGCGAGG CCCAGCGCAT CCGCCTGGCC GCGCAGCTCG GCAGCAATCT GCAGGGCGTC
TGCTACGTGC TCGACGAGCC GACCATCGGC CTGCACCCGC GCGACAACCA GGTGCTGCTC
AACGCGCTGC ACAAGCTCGG CGCCAGCGGC AACACGCTGG TGGTGGTGGA GCACGACGAG
GACACCATCC GACGCGCCGA CCACATCATC GACATCGGCC CCGGTGCGGG CCGGCGTGGC
GGCCGGATCA TGGCCGAGGG CACGGCGGCC GAGCTGATGT TGCACCCGGA TTCGATCACC
GGGCGCTTCC TGAACGCGCC GCTGAAACAC CCGCTGAAAG CGCGCCGCCC GGTGGATGCG
CAGACGCCCG GGCTGACGCT GCGCGGCGCC AAGCTGCACA ACCTGCGCGA CGTCGATGTC
GAGGTGCCAT TGGCGCGGCT GGTGGCGGTC ACCGGCGTCT CCGGCTCGGG CAAGAGCACG
CTGGCGCGCG ACGTGCTGCT GGCCAACGTG CAGGCCATCG TCAACCACAA GCTGGCCGGC
AAGAACGCCG GCGCGCGCCC GGCCTGGACC GGCTGCACGG GGCTGGAAGG CTGGAGCAAC
GTCGACCGCG TGCTCGAGGT CGACCAGACC CCGATCGGCA AGACCCCGCG CAGCTGCCCG
GCCACCTACA TCGGCTTCTG GGACACCATC CGCAAGCTCT TCACCGAGAC GCTCGAGGCC
AAGGCGCGCG GCTACGCGGC CGGCCGCTTC AGCTTCAACA TCGGCGGCAA GAGCGCGGGC
GGCGGCGGGC GCTGCCCCGG CTGCGAAGGC CAGGGCATGC GCACGATCGA GATGGCCTTC
CTGCCCGACG TCAAGGTGCC GTGCGACCTC TGCCACGGCG CACGGTTCAA CCCCGAGACG
CTGGCCGTGA CCTGGCGCGG CAAGAGCATC GGCGAGGTGC TGCAGATGGA GGTCGACGAA
GCGGTCGACT TCTTTGCCAG CATGCCCAGC ATCGCGCACC CGCTGCAGTT GCTGAAGGAC
GTCGGCCTGG GCTACCTGAC ACTCGGCCAG CCGTCACCGA CGCTCAGCGG CGGCGAGGCC
CAGCGCATCA AGCTCGTCAC CGAACTGAGC AAGGTGCGCG ACGACGTGAC GCGGCGCGGC
CAGAAGGCGC CGCACACGCT CTATGTGCTC GATGAACCGA CGGTCGGCCT GCACATGGCC
GACGTCGAGA AGCTGATCAA GGTGCTGCAC CGGCTGGTCG ACGGCGGGCA CAGCGTGATC
GTGATCGAAC ACGATCTGGA CGTGATCGCC GAGGCGGATT GGGTGATCGA CCTCGGGCCC
GAGGGTGGTT CGGGCGGCGG TCAGGTGGTG GTGTGCGGGA CGCCGGAGGC GGTGGTGAAG
AGCCGCAGCC ACACGGGGGT GGCGTTGAAG GCTGTGCTGG CGCGCTAA
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| Protein sequence | MPGQNAPPTS VKRTGLIRIR GARQHNLKNL DLDIRTGELT VVTGPSGSGK SSLVFDTLYA
EGQRRYVETF SAYARQFLDR MDRPAVDSVE GVPPAIAIDQ TNPVRTSRST VGTMTELNDH
LKLLFARAAQ LFDQDTAQPV REDDPDTIWA DLKARSEAAG DPRLVITFPV ELPAGTTPAE
IEQWLSASGY TRVHAEREVA TPTGPRKVLD VVADRFRFSG AEKIRVNEAL ETALKRGGRC
NVYVVPTDGG DEQVWRYSQG LHCPESDRRY SHPQPAMFSF NSAFGACETC RGFGRVIGVD
FGLVIPDPRK TLRGGAIKPL TTPAWKECQD DLIKYAGDAG IPRDSAWAQL SESQKSWVID
GSPNWTGKWN QQWYGIKRFF EYLESKAYKM HIRVLLSKYR SYTPCGDCGG ARLKTESLLW
RLGEKQQADL GLPPAKRFMP VGVKWSRAQL EALPGLSLHD LMLLPIDRMR VFFDKLDLPS
QMLDDALQLL LDEIRTRLKY LCDVGLGYLS LDRQSRTLSG GEVQRINLTT ALGTSLVNTL
FVLDEPSIGL HPRDMHRINE AMLRLRDAGN TLVVVEHDPA VMLAADRVID LGPGPGTQGG
RIVFDGTPED LKAAETLTGA YLGARRSIGL GLMRPVLDST PRLIIEGVRE HNLKNISVEF
PLQRLVCVTG VSGSGKSTLM QDVLYPALAR HFGQASESPG EHDRLLGADW ISDAVFVDQS
PIGKTARSNP ASYVGAFDTV RDIFAALPAA QQRNYTAGMF SFNAGDGRCP TCGGSGFEHV
EMQFLSDVYL RCPDCDGTRY RPELREVKVE RLGKSLSISD VLELTVADAV RLFADDREVV
RALQPLADVG LDYVKLGQPV PTLSGGEAQR LKLAGFLAEA AKSGSASKQK LARKGTLFLF
DEPTTGLHFD DIAKLMRAFR KLLEAGHSLL VIEHNLDVVR ASDWIVDLGP EGGEAGGELV
AEGTPADLRA HPTSHTGQSL REYDLSLGTG GIAVEEGRPL QWVVKARRDE AKRAVGNIAD
EMIQIVNARE HNLKGLSVNI PRGKFSVVTG VSGSGKSTLA FDILFNEGQR RYLESLNAYA
RSIVQPAGRP EVDAVYGIPP TVAIEQRLSR GGRKSTVATT TEVWHFLRLL YVKLGTLYCP
KCSDFHAPHG DVAPGQDPDG WVAVRPQTPE QIAAQMLRAP EAGGYRGQHI GLLAPLVVNR
KGVYTDLAKW AKGKGYTHLR VDGEFLPTDK WPKIDRYKEH TIELPVADLI VEVDNEPLLK
AKLAEALEHG KGVLHLLTPL KGLKTAMAAG ESGRIGRTQV FSIKRACPQC GTSYPELDPR
MFSYNSKHGW CVDCVGTGLT LTREQRKALD DTQQDDDNKG REKTFAEPEV EDLVDAPCGT
CHGARLNPVS QAVRFRGESI AALAALSVND AARWVARQKL DGREGAIARD VVSEIRSRLS
FLDEVGLGYL TLDRAAPTLS GGEAQRIRLA AQLGSNLQGV CYVLDEPTIG LHPRDNQVLL
NALHKLGASG NTLVVVEHDE DTIRRADHII DIGPGAGRRG GRIMAEGTAA ELMLHPDSIT
GRFLNAPLKH PLKARRPVDA QTPGLTLRGA KLHNLRDVDV EVPLARLVAV TGVSGSGKST
LARDVLLANV QAIVNHKLAG KNAGARPAWT GCTGLEGWSN VDRVLEVDQT PIGKTPRSCP
ATYIGFWDTI RKLFTETLEA KARGYAAGRF SFNIGGKSAG GGGRCPGCEG QGMRTIEMAF
LPDVKVPCDL CHGARFNPET LAVTWRGKSI GEVLQMEVDE AVDFFASMPS IAHPLQLLKD
VGLGYLTLGQ PSPTLSGGEA QRIKLVTELS KVRDDVTRRG QKAPHTLYVL DEPTVGLHMA
DVEKLIKVLH RLVDGGHSVI VIEHDLDVIA EADWVIDLGP EGGSGGGQVV VCGTPEAVVK
SRSHTGVALK AVLAR
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