Gene Lcho_4188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4188 
Symbol 
ID6162127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4694601 
End bp4695059 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content74% 
IMG OID641666965 
Productcarboxymuconolactone decarboxylase 
Protein accessionYP_001793204 
Protein GI171060855 
COG category[S] Function unknown 
COG ID[COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 
TIGRFAM ID[TIGR02425] 4-carboxymuconolactone decarboxylase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.412642 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCACC CGCACGACCC CGTTCCGGCT GCCGCCGCCG CCAGCCCCGA CGACGCTCAC 
CCGCCGCGCA GCCCCGGCGA GACGATGCGC CGCCGCGTCA TGGGCGACCC CTTCGTCGAC 
CGGGCCCTGG CGCAGGCCGA CCCGTTCTCG CGCCCGCTGC AGGCGTTCAT CAGCGAACAC 
GCCTGGGGCG CCACCTGGCA GCGCGGCGGG CTCGAACTCA AGCAGCGCAG CCTGTGCACC 
GTGGCGATGC TGGCCGCGCT GGGCCGCAGC CACGAGCTGA AGGGCCACCT GCGCGGCGCG 
CTCAACAACG GCGCCACGCT GGCCGAACTG CGCGAGGTGC TGCTGCACGT CGGCCCGTAT 
GCCGGCGCAC CGGCGGCGGT GGAGGCGTTC CGGGCGGCCC GTGAGTGGAT GGCCGAAAGC 
GGGTTGCGGT TCGAGGACGA CGATCTGCAG GCCGATTGA
 
Protein sequence
MTHPHDPVPA AAAASPDDAH PPRSPGETMR RRVMGDPFVD RALAQADPFS RPLQAFISEH 
AWGATWQRGG LELKQRSLCT VAMLAALGRS HELKGHLRGA LNNGATLAEL REVLLHVGPY 
AGAPAAVEAF RAAREWMAES GLRFEDDDLQ AD