| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4185 |
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| Symbol | |
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| ID | 6162124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4692741 |
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| End bp | 4693466 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666962 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001793201 |
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| Protein GI | 171060852 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTCT CCCAAGTGCT TTTTTCCCAA GGCTTCGGTG CCCGCCGCGA GTGCGAGGGC
CTGATCTGCG CTGGCCTGGT CAGCGTCGGC GGCGTGGTGA TCGAGGAGCC GTCACACGAG
GTCGCGCCCG AGGGGCTGCT GTTCACGGTC GAGGGCCAGA CCTGGGCCTA TCACGCCAAG
GCGCTGATCG TGATGAACAA GCCGGCCGGC TTCGAGTGCT CGAAGAAACC GCGGCACCAC
CCGAGCATCT ACAACCTGCT GCCCGCGCAG TTCAAGCGCC GGGACATGCA GACCGTCGGC
CGGCTCGATG AAGACACCAC CGGCCTGCTG CTGTTCACCG ACGACGGCAA CCTGATCCAC
CGCTGGACCT CGCCCAAGCA CCACGTGCCC AAGATCTACG AGGCCGGCTG CAAGCACCCG
GTCGATGAAG CGCAGGTGGC GCGCCTGCTG GCCGGCGTGG TTCTGCACGA CGATCCGCTG
CCGGTGCAGG CGCTGGCGGC CGAGATCACC GGGGCGTTCG AGCACCCGAC GCACGGCACG
CTGCACGGCC TGCGGCTGAC GCTGGCCGAA GGCAAGTACC ACCAGGTCAA GCGCATGCTG
GCGGCGGTCA GCAACCGGGT CGAGACGCTG CACCGCAGCG GCTTCGGCGC CTATCGCCTG
CCGGACGACC TCAAGCTCGG CGAGTGGCGC TGGCTGCCGG GCCCGCAAGC GGTGGTGCCG
CGCTGA
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| Protein sequence | MKLSQVLFSQ GFGARRECEG LICAGLVSVG GVVIEEPSHE VAPEGLLFTV EGQTWAYHAK
ALIVMNKPAG FECSKKPRHH PSIYNLLPAQ FKRRDMQTVG RLDEDTTGLL LFTDDGNLIH
RWTSPKHHVP KIYEAGCKHP VDEAQVARLL AGVVLHDDPL PVQALAAEIT GAFEHPTHGT
LHGLRLTLAE GKYHQVKRML AAVSNRVETL HRSGFGAYRL PDDLKLGEWR WLPGPQAVVP
R
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