| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4183 |
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| Symbol | |
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| ID | 6162122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4690722 |
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| End bp | 4692200 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666960 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001793199 |
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| Protein GI | 171060850 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGC CATTCGCCAC CTCACTCGGC AGCCCGCCCG TCCATGCCGT GGACAGCAAA
CCGCAGGACA CGCTGTACCT GCAGATCGCC GAGCGCCTGG CGCAGTCGAT CCGTGCCGGC
ACGCTCAGCC GCGGCGAGCG CATTCCGTCG GTGCGTGATC TGGCGCGCCA GCAGGGCGTG
TCGCCGTCGA CTGCGGTGCA GGCCTACCGC GCGCTCGAAG ACGCCCGCCT GATCGAGGCC
CGGCCGCGTT CGGGCTATTT CGTCGCCGCA CGCCCGGCGC GCCTGCCCGA ACCCGAGCCG
TCGGCGCCCC CGGCCGCGTC GCTGCCGGTG GATGTCAGCT CGCTGGGCGA GCAGGTCATG
CGGCTGGCGA TGGACCCGGC CTACATCTCG TTCGGCGCGG CCTGCCCGAG TGGCGAGCTG
TTCGCGCAGG AGCGCGTGCG GCGCGCCGTC AGCCGCGCCG CGCAACGCCA CCGCGCCTCG
TTGTGCCGCT ATCCGCTGGG CCCCGGCAAC GACGGCCTGC GTCGCGCCAT CGCCCGCCAC
GCGCTGGGCA TGGGCTGCCA GCTCGACCCG CGCGACATCC TCGTCACCAA CGGCTGCCTC
GAATCGATCA GCCTGTGCCT GCGCGCCGTC ACGCGGCCGG GCGACGTGGT GGCGCTGGAG
TCGCCGACCT ACTTCGGCTT TCTGGAGATC CTCGAAAGCA TGCACCTGCG CGCGCTCGAG
ATCCCGACGC ACCCGCGCAC CGGCCTGTCG CTCGACGCGC TGCAGCTCGC CTTCGACACC
CAGCCCGTCA AGGCCGTGCT CGCGGTGCCC ACGCTCAGCA ACCCGATGGG CTCGTGCATG
CCGCTGGCCG ACCGCAAGCG GCTGGCGCAG ATGCTGAGCC AGCGCGGCAT CCCGCTGATC
GAGGACGTGC TCTACAACGA CCTGGCGGAG CAGGACGACA AGCGCCGCGC GGTCAAGGCC
TTCGACAGCA CCGGCGACGT GATGATCTGC GGCTCGTTCT CCAAGACCGT GGCGCCGGGC
ATCCGGCTCG GCTGGGTCGA GGGCGGGCGC TGGTCGGCGC AATTGCGTCG GCTCAAGGCG
GTGCATTCGG GCGGCCACAC CGAGCTGCTG GAGGTGGCGA TGGCCGACCT GCTGACGCAG
CCCGGCCACG AGTCGGCCTA CCGCCAGCTG CGCGCCACGG TGGCGGCGCG TGTGGATGAG
GCGCGCGGCC TGATCGCCGA GAGCTTCCCG AAAGGCACCC GCGTCACCGA CCCGGCCGGC
GGCTTCATCC TGTGGGTCGA GCTGCCGGCC GGCATCGACT CGGTGGCGCT GTTCCACGCC
TGCCTGGCGC GCAAGATCTG CATCGCGCCG GGCACGATGT TCAGCGCCAC CGACCGCTTC
CGCCACTGCA TCCGCCTGGG TGTGGGCGGG CGCTGGGACG AGGCGCAGCG GGCGGCGCTG
CGCGAGGTGG GCGCCATCGC CCGGCGCATG TTGGGGTGA
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| Protein sequence | MSTPFATSLG SPPVHAVDSK PQDTLYLQIA ERLAQSIRAG TLSRGERIPS VRDLARQQGV
SPSTAVQAYR ALEDARLIEA RPRSGYFVAA RPARLPEPEP SAPPAASLPV DVSSLGEQVM
RLAMDPAYIS FGAACPSGEL FAQERVRRAV SRAAQRHRAS LCRYPLGPGN DGLRRAIARH
ALGMGCQLDP RDILVTNGCL ESISLCLRAV TRPGDVVALE SPTYFGFLEI LESMHLRALE
IPTHPRTGLS LDALQLAFDT QPVKAVLAVP TLSNPMGSCM PLADRKRLAQ MLSQRGIPLI
EDVLYNDLAE QDDKRRAVKA FDSTGDVMIC GSFSKTVAPG IRLGWVEGGR WSAQLRRLKA
VHSGGHTELL EVAMADLLTQ PGHESAYRQL RATVAARVDE ARGLIAESFP KGTRVTDPAG
GFILWVELPA GIDSVALFHA CLARKICIAP GTMFSATDRF RHCIRLGVGG RWDEAQRAAL
REVGAIARRM LG
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