| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4179 |
|---|
| Symbol | |
|---|
| ID | 6162231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4687483 |
|---|
| End bp | 4688457 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641666956 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001793195 |
|---|
| Protein GI | 171060846 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGT CAGACCCGCC TCGCCCCACC GTCGAACCCC TGCACATCCT GCTCGCCGGC
CGCTGGGACG GCGACGAGCG CGATGCCTGG CTCGCCGCAC TTGCCGCCGC GCTGCCCGAG
GCGGTCTGGT GGCTCGATGC CGGCGGGCCG CAGGCCGGGC GGATCGAGGT GGCGGTGGTC
GCCAACCCGG CGCCGGGCGT GCTGGCGGGG CTGCCGCGGC TGGGGCTGAT CCAGTCGCTG
TGGGCCGGTG TCGACCGGCT GCTGGCCGAT CCCACGCTGC CCGCCGAGGT GCCGCTGGCG
CGCATGGTCG ATCCGGCGAT GAACGCGGCC ATGGCGCAGA CCGCGCTGTG GGCCACGCTG
ACGCTGCACC GCGGTTTCCA CCGCTACGCG CAGGCCCAGC GCGAGGGCCG CTGGGCGCCG
CACGCGCAAC GCCGCGCCGA TGAAGTCGCC GTGGCGGTGC TCGGCCTCGG CCAGATGGGC
CGCGCCACCG CGAGCCGGCT GCGCGCGCTC GGTTATGCCG TCACCGGCTG GAGCCTGCAC
GAAGCGATCG ACGCGCCGGT GCCCGCGGTG GCCGGGCCGG CGGCGCTGCC CGCGCTGCTG
GCGCGCAGCG AGATCGTCAT CAACCTGCTG CCGCTGACCG ACGCCACGCG CGGCCTGCTC
GACGCGGCGT TCTTTGCCGC GCTGCCGCGG GGTGCGGCGC TCGTCAACCT GGCGCGGGGC
GCGCATGTGA TCGATGCCGA CCTGCTGGCC GCGCTCGACA GCGGCCAGCT CGGCCACGCG
GTGCTGGATG TCTTCCGGAC CGAGCCGCTG CCGGCCGATC ACCGCTATTG GCGGCACTCG
GCGGTGACGC TGCTGCCGCA CGCTGCGGCC CTGACCGACG CCCGCAGCGC CGCGGCGGTG
GTGGCGCGCA ACGTGCGCGC CTGGCGCTCG GGCGAGGCGC TGCTGCACCG GGTCGATCGG
CGGCGCGGGT ATTGA
|
|---|
| Protein sequence | MDTSDPPRPT VEPLHILLAG RWDGDERDAW LAALAAALPE AVWWLDAGGP QAGRIEVAVV
ANPAPGVLAG LPRLGLIQSL WAGVDRLLAD PTLPAEVPLA RMVDPAMNAA MAQTALWATL
TLHRGFHRYA QAQREGRWAP HAQRRADEVA VAVLGLGQMG RATASRLRAL GYAVTGWSLH
EAIDAPVPAV AGPAALPALL ARSEIVINLL PLTDATRGLL DAAFFAALPR GAALVNLARG
AHVIDADLLA ALDSGQLGHA VLDVFRTEPL PADHRYWRHS AVTLLPHAAA LTDARSAAAV
VARNVRAWRS GEALLHRVDR RRGY
|
|---|
| |