| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4177 |
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| Symbol | |
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| ID | 6162229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4685004 |
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| End bp | 4686476 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666954 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001793193 |
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| Protein GI | 171060844 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGAAT CTGCGACTTT GGATGCCTCG ATCGACGATC TGCCTGACGC CTGCTTCGTG
CTTTCGTCGA CCGGGATCGT GCTCCAGTGG AACGCCGGGG CCGAGGAGGT GTTCGGCCAT
TCGGCGGCCC AGGCGCTGGG GCACGACCTG ATCGAGCTGG TCGTGCCCGA CGACCAGGCC
GGCCCGCAGC GCGCGTGGCT GGCGACCACC CTGGCCGGCG GGCCGAGCAC CTGCGAGGCG
GTGCGCCGGC GCCGCGACGG CTCGCTGCTC TGCGTCGACG TCACCAGCCG CATGCTGCCC
GCGCCGCCGG GCCAGCCCGC GCGCATCCTG GTGGTCGAGA AGGACGTCAC CCTCATTAAG
GTGCAGCGCG ACGCCAAGCT GATGGAGGCG CGTTTTCGCG AGCTGCTCGA GTCCACGCCC
GACGGCATCG TGATGGTCAA CCCGACCGGC CACATCGTCA TCGCCAACAG CCAGGCCGAG
CGCCTGTTCG GCTACCCGCC CGGTGGCTTG CGCGGCCGCT CGGTCGACCA GCTGCTGCCC
GAGCGCTACC GCCACGCGCA CGTGGCGCAC CGCTCGCAGT ATTTCCTGCA GCCGCGCAAG
CGGGCGATGG GTTCGGGGCT CGACCTGGCC GGCCTGCGGC GCGACGGCAC CGAGTTCCCG
ATCGAGATCA GCCTCGGCCC GCTGCGCACC GAGGACGGCG CCTTCGTGAT GAGCGCGATC
CGCGACATCA GCGAGCGCAA GCGCTTCGAG CGCGCGCTGC AGGAGAAGAA CGTCGAGCTG
GCCGCGGCCA ACGAGGCCAA GACCCGTTTC CTGGCCAACA TGAGCCACGA GCTGCGCACG
CCGCTGAACG CCATCATCGG CTTCACCGGC ACGCTGCTGA TGCGCCTGCC CGGCCCGCTC
ACGCCCGACC AGGAACGCCA GCTGCGCACC GTGCAGGCCA GCGGGCGCCA CCTGCTGGCG
CTGATCAACG ACCTGCTCGA CGTCGCCAAG ATCGAGGCCG GCAAGGCCCA GATCCACCTC
GAGATGCTCG ACGTCGGCGC GCTGCTGCAC GAGGTGGTCA GCACGCTGCA CCCGCAGGCC
GTGGCCAAGG GCCTGGCGCT CACGCTGAGC GTGCCCGAGC CGGCGCTGCA GTGCGAGAGC
GACCGCCGCA TGCTCAACCA GATCGTCATC AACCTGATCG GCAACGCGAT CAAGTTCACC
GATGCCGGCT CGATCCACGT CGGCCTGCGC GCGCGTGCCG GCGGCTTCGA GATCGAGGTC
ACCGACACCG GCATCGGCAT CGGCACCGAC GACCAGGCCA AGCTGTTCGG CGCCTTCAGC
CGCGTCGTCA GCAGCCAGGG CCGGGTCGCC GAAGGCACCG GGCTGGGCCT GCACCTGAGC
CAGAAGCTCG CGGCCCTGCT CGGTGGCACG ATCGACGTGC GCAGCGAGGC GGGCCGCGGC
AGCTGCTTCA GCCTGCGCGT GCCGGGGGGC TGA
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| Protein sequence | MRESATLDAS IDDLPDACFV LSSTGIVLQW NAGAEEVFGH SAAQALGHDL IELVVPDDQA
GPQRAWLATT LAGGPSTCEA VRRRRDGSLL CVDVTSRMLP APPGQPARIL VVEKDVTLIK
VQRDAKLMEA RFRELLESTP DGIVMVNPTG HIVIANSQAE RLFGYPPGGL RGRSVDQLLP
ERYRHAHVAH RSQYFLQPRK RAMGSGLDLA GLRRDGTEFP IEISLGPLRT EDGAFVMSAI
RDISERKRFE RALQEKNVEL AAANEAKTRF LANMSHELRT PLNAIIGFTG TLLMRLPGPL
TPDQERQLRT VQASGRHLLA LINDLLDVAK IEAGKAQIHL EMLDVGALLH EVVSTLHPQA
VAKGLALTLS VPEPALQCES DRRMLNQIVI NLIGNAIKFT DAGSIHVGLR ARAGGFEIEV
TDTGIGIGTD DQAKLFGAFS RVVSSQGRVA EGTGLGLHLS QKLAALLGGT IDVRSEAGRG
SCFSLRVPGG
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