| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4175 |
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| Symbol | |
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| ID | 6162227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4681343 |
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| End bp | 4684594 |
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| Gene Length | 3252 bp |
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| Protein Length | 1083 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666952 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001793191 |
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| Protein GI | 171060842 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGTG TACTGGTCAT CGACGACGAA TCCGACAACC GCGCCCTGGT CGTGACGCTG
CTGCGCTATG CCGGCCACGA GGCCTGCGAG GCCGGCGACG GCGCCCAGGG GCTGCTGATC
GCGCAGGCCC AGCGGCCCGA CCTGGTGGTG TGCGACCTGC TGATGCCGAC CATGGACGGC
TACGAGTTCG TGCGCCGGCT GCGCAACGAG ACCGGCATCG CGCACACCGA GGTGATCTTC
TGGACCGCCA CCTTCCTGGA GCGCGAGGCC CGCAAGCTGG CGCTGGCCTG CGGCGTGACG
CGGGTGCTGA CCAAGCCGAC CGAGCCCGAG CTGATCCTGG AGACCGTGGC GCAGGCGCTG
GCGCAGGTGG CCCCGGCCGC CGCCGGCCGG GTGGTGACGC TGCCGCAGCC GCGGGCCGAC
GACTTCAGCG CCGAGCACCT GCGGGTGGTG AGCGACAAGC TGCTGGCCAA GGTGGCCGAG
CTGGAGGTCG CCAACCAGCG GCTGTCGGCG CTCAACCAGA TGAGCCTGCT GCTGGCTTCC
GAACGCGACC CGCACACCCT GCTCGACCGG CTCTGCCGCG GCGCCCGCGA GCTGCTGGGC
GCGCGCGCGG CGGTGCTGTG CGTCAAGGAT CCGCGCAACG GCGCCGACCT GCACCGCAGC
GTCTGGGGCC TCGATGCGGA GCAGGCCGAG GCCGCGCGGG CCTTGCCGTT CATGGTGCCG
GTGGCGCAGT CGACGCTGAT CGAGCGCCGC CCGCAGCGCT TCGGGCCGGC GGGCCCGGCT
GATGCCCCGG TCGAGCTCGG CGCCGGCCTG CCGCCGCTGG CCAGCGGGCT GATCGTGCCG
GTGGCGTCGC TGGAGCATGT CTACGGCTGG CTGCTGCTGA TCGACAAGCT CGGCGAGCCC
GGCTTCAGCG CCGACGACGA GGCGCTGCTC GTCACGCACG CCGCGCAGGC CGGGCGCATC
TTCGAGAACG GCAGCCTCTA CGCCCGCGTG CAGCGGCACC TGGCCGACCT GCGGGTCGAG
ATCGCCGAAC GCCAGCGCGG CGAGGCGCAG CTGCGCCAGA GCGAGGCGCG GCTGGCCGGG
CTGGTCGAGT CGGCGATGGA CGGCATCGTG GCGGTCGACA ACGCGCTGCG CATCGTGCTG
TTCAACCCGG CGGCGGCGCA GATGTTCGGC TACCGCACGG CCGAGATGCT CGGCCAGCCG
CTCGACCGCC TGCTGCCCGA GGACCATCGC GGCACGCACG ACAGCGCCGT GCGCGCCTTC
GGTTCCGGGG GGGGCCGGCC GCGCTCGATG GGGGGCGTGG CGCGCACCGT GACCGGGCTG
CGCCGCAGCG GCGAGGCGTT CCCGATCGAT GCCTCGATCT CGATGATCGC CACCGACGGC
GATCCGCTCT ACGTCGTCAT CCTGCGCGAC ATCACCGCAC GCGTGCAGGC CGAAGATCAC
ATCCGCCGGC TGGCCCGCGT GGCCACCGTG CTGAGCGACA TCAACTCGCT GATCGTGCGC
GTGCGCGACC GCGACGAGCT GATGCACGAG GCCTGCCGCA TCGCCGTCGA GGAAGGCCGG
TTCCGCCGCG CCTGGGTCGG CATGGTCGAG CCCGACGGCC TGCGCGTGAG CGTCAGCGCC
GGCCCCGACG ACGGCTACAT GGCGCAGCTG CGTGCCGAGC TGGCCGCCGA GCCGCTGGCG
CCCGATTCGC TCTATGCCCG GGCGCTGCAC AGCCACGAGC CGCTGGTGCT CAACGACCTC
TCGAAGGCGG CGGGCCTGCG TTTCGCGGCT GCGGCACGCG GCTGCGGTTC GGGCGCGCTG
GTCTGGCTGC CGCTGGTGGT GTCGGGCCAG TGCGTGGCGG TGATGTCGCT GCATGCCGAC
GCGCCCGGCT TCTTCGACGC CGATGAGATG AAGCTGCTGC GCGAGCTGGC CGGCGACATG
TCGTTCGCGC TCGAGCACAT CGCCCAGCAG GAGCGGCTGG TGCACCTGGC CTACTACGAC
CTGCTCACCG GCCTGGCCAA CAGCACGCTG TTCCACGAGC GGCTCGAGCG CCACGTCGAG
GCCGCCTGCG CGGTGCGCCA GAAGGTGGCG GTCGCGCTGG TCGACCTGGT GCGCTTCAAG
ATGATCAACG ACACGCTCGG CCGCCACGCC GGCGATGCGC TGCTCAAGCG GGTGGCCGAG
CGGCTGCTCG ACTGTGTCGG CGATCATGCC CAGATCGCCC GTGTCAGCGC CGACCGCTTC
GCGGTGGTGT TTGCCGACGT GCGCGCCGAA GCCGACCTGG CCCGGGTGTT CGCGACCCAG
TACACCGAGT GTTTCGGCCT GCCGTTCACG ATCGACAGCC AGGATCTGCT GGTCTCGGCC
AAGGTCGGCA TCGCGCTCTA TCCCGACGAC GGCGGCAACG CCGAGACGCT GTTCCGCAAC
GCCGAGGCGG CGGTCAAGAA CGCCAAGTCG GCCGCCGACA CGGTGCTGTT CTACAACCCG
CGCATGAGCG CCACGGTGGC CGAGACGCTG GCGATCGAGA ACCGCCTGCG CCAGGCGCTG
GAGCAGGGCC AGTTCGTCCT GCACTACCAG CCCAAGGTCG ATCTCGACAG CCGCCGCATC
GTCTCGGTCG AGGCCCTGCT GCGCTGGCAG AGCCCGGAGC TGGGCCTGGT GCCGCCGCTC
AAGTTCATCC CGCTGCTGGA GGAAACCGGC CAGATCCTGG CGGTCGGCGA CTGGGCCCTG
CGCTGCGCCG CGCGCGATCA CAAGCACTGG CGTGAACTCG GCCTGCCGGC GCCGCGCATC
GCCGTCAACG TGTCGGCGAT CCAGCTGCAC CGCGACGACT TCGTGGCCGC GCTCGCCCTG
GCGCTGCAGG AGGAGGGCGG CCAGCCCGCC GGCATCGACA TCGAGATCAC CGAGACCATC
GTGATGCAGG ACGTCGAGGC GTCGGTGGCC AAGCTGCACG CGCTGCGCGC GATGGGCGTG
GACGTGGCGA TCGACGACTT CGGCACCGGC TACTCGTCGC TCGCCTACCT GTCGCGCCTG
CCGGTGCAGC TGCTCAAGAT CGACCGCGCC TTCGTCGACA CCATGCTGTC CGACCCGAAC
AACATGATCC TGGTCTCGAC CATGATCTCG CTGGCGCATT CGCTGCGCAT GAAGGTGATC
GCCGAGGGGG TCGAGACCGA GGAGCAGGCC AAGATCCTGC AGCTGCTGCG CTGCGACCAG
ATGCAGGGTT ATCTGGTGTC GCGGCCGGTG CCGCGCGAGC AGATCACGGC GATGCTGCAG
GCGGCGGCCT GA
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| Protein sequence | MARVLVIDDE SDNRALVVTL LRYAGHEACE AGDGAQGLLI AQAQRPDLVV CDLLMPTMDG
YEFVRRLRNE TGIAHTEVIF WTATFLEREA RKLALACGVT RVLTKPTEPE LILETVAQAL
AQVAPAAAGR VVTLPQPRAD DFSAEHLRVV SDKLLAKVAE LEVANQRLSA LNQMSLLLAS
ERDPHTLLDR LCRGARELLG ARAAVLCVKD PRNGADLHRS VWGLDAEQAE AARALPFMVP
VAQSTLIERR PQRFGPAGPA DAPVELGAGL PPLASGLIVP VASLEHVYGW LLLIDKLGEP
GFSADDEALL VTHAAQAGRI FENGSLYARV QRHLADLRVE IAERQRGEAQ LRQSEARLAG
LVESAMDGIV AVDNALRIVL FNPAAAQMFG YRTAEMLGQP LDRLLPEDHR GTHDSAVRAF
GSGGGRPRSM GGVARTVTGL RRSGEAFPID ASISMIATDG DPLYVVILRD ITARVQAEDH
IRRLARVATV LSDINSLIVR VRDRDELMHE ACRIAVEEGR FRRAWVGMVE PDGLRVSVSA
GPDDGYMAQL RAELAAEPLA PDSLYARALH SHEPLVLNDL SKAAGLRFAA AARGCGSGAL
VWLPLVVSGQ CVAVMSLHAD APGFFDADEM KLLRELAGDM SFALEHIAQQ ERLVHLAYYD
LLTGLANSTL FHERLERHVE AACAVRQKVA VALVDLVRFK MINDTLGRHA GDALLKRVAE
RLLDCVGDHA QIARVSADRF AVVFADVRAE ADLARVFATQ YTECFGLPFT IDSQDLLVSA
KVGIALYPDD GGNAETLFRN AEAAVKNAKS AADTVLFYNP RMSATVAETL AIENRLRQAL
EQGQFVLHYQ PKVDLDSRRI VSVEALLRWQ SPELGLVPPL KFIPLLEETG QILAVGDWAL
RCAARDHKHW RELGLPAPRI AVNVSAIQLH RDDFVAALAL ALQEEGGQPA GIDIEITETI
VMQDVEASVA KLHALRAMGV DVAIDDFGTG YSSLAYLSRL PVQLLKIDRA FVDTMLSDPN
NMILVSTMIS LAHSLRMKVI AEGVETEEQA KILQLLRCDQ MQGYLVSRPV PREQITAMLQ
AAA
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