Gene Lcho_4173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4173 
Symbol 
ID6162401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4679798 
End bp4681000 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content71% 
IMG OID641666950 
ProductBcr/CflA subfamily drug resistance transporter 
Protein accessionYP_001793189 
Protein GI171060840 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGTT CTCTCCTGCG CCACGCGCTC ATCCTCGGCC TGCTCTCGGC CATCGGGCCG 
TTCGCGATCG ACATGTACCT GCCCGCGCTG CCGACCATCG GCCAGGCGCT GCAGGCCGAC
ACCCGGCAGG TCCAGATGAG CCTGATGGTG TTCTTCGTCG CGCTGGGCGT CTGCCAGCTG
GTCTACGGGC CGCTGAGCGA CCAGTTCGGC CGCAAGCCGC CGCTGTATTT CGGCCTGCTG
CTGTTCGCCG CGGGCAGCAT CGGCTGCGCG CTGGCGACCG ACATCGAGAC GCTGATCGCC
TTCCGCTTCA TCGCCGGCGT GGGCGCCTGC GCCGGCATGG TGGTGCCGCG CGCGATCGTG
CGCGACCTGC ACACCGGCGT CGAAGCGACC CGGCTGACCT CGCTGCTGAT GCTGGTGTTC
AGCGTCTCGC CGATCCTGGC GCCGCTGGCG GGCAGCGCGA TGATCGCCGT GGCCGACTGG
CGCGGCATCT TCTGGGCCAC GATGGTGGCC GCCGTGCTGG CGGTGGCGAT GATGGCGGCC
TGGCTGACCG AGAGCCGCCC GCGCGCCGCG CGCCAGGACA GCAACCTGCG CAGCGCGCTG
GCGGCCTACG GCCAGCTGCT GCGCGACCGC CACTTCATGG GCCTGACCTT GATCGGCGCG
TTCGCGATGT CGGGTTTCTT CGCCTACCTG GCCAACTCGT CGTTCGTGCT GATCGAGCAT
CACGGCCTGA CGCCGGCGCA ATACAGCCTG TGCTTCTCGG CCAACGCCGC CGCCTTCATC
GGCACGGCGC AGTTCACCGG CCGGCTGGTG CAGCGCCTGG GCCTGCCGGG CGTGGTGCGG
CGCGGCGTGA TGGGCTTCAG CGCCTTCGCC TTCGTGCTGT GGCTGTGTTA CGCCGCCGGC
GCCGACTCGC TGGCGCTGCT GCTCGTGCTG GTGTTCCTGA GCTTCGGTTT CCTCGGCCTG
GTGGTGCCCA CCACCGCGGT GCTGGCGCTC GAGGAACACG GCGAGATCGC CGGCACCGCC
TCGGCCCTGC TCGGCACGCT GCAGATGGTG ACCGGCGCGC TGGTGATGGG CGCGATCTCG
CTGTTCGTCG ACGGCAGCGC GCGACCGATG GTGCACGGCA TCGCCGCCTG CGCGCTGATC
ACGGCGGTGC TGACGCATTT CACGCTCGCG GGCGTGCAGC GCGCCCCGGC GGCGGCCACC
TGA
 
Protein sequence
MTRSLLRHAL ILGLLSAIGP FAIDMYLPAL PTIGQALQAD TRQVQMSLMV FFVALGVCQL 
VYGPLSDQFG RKPPLYFGLL LFAAGSIGCA LATDIETLIA FRFIAGVGAC AGMVVPRAIV
RDLHTGVEAT RLTSLLMLVF SVSPILAPLA GSAMIAVADW RGIFWATMVA AVLAVAMMAA
WLTESRPRAA RQDSNLRSAL AAYGQLLRDR HFMGLTLIGA FAMSGFFAYL ANSSFVLIEH
HGLTPAQYSL CFSANAAAFI GTAQFTGRLV QRLGLPGVVR RGVMGFSAFA FVLWLCYAAG
ADSLALLLVL VFLSFGFLGL VVPTTAVLAL EEHGEIAGTA SALLGTLQMV TGALVMGAIS
LFVDGSARPM VHGIAACALI TAVLTHFTLA GVQRAPAAAT