Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4173 |
Symbol | |
ID | 6162401 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4679798 |
End bp | 4681000 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641666950 |
Product | Bcr/CflA subfamily drug resistance transporter |
Protein accession | YP_001793189 |
Protein GI | 171060840 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCGTT CTCTCCTGCG CCACGCGCTC ATCCTCGGCC TGCTCTCGGC CATCGGGCCG TTCGCGATCG ACATGTACCT GCCCGCGCTG CCGACCATCG GCCAGGCGCT GCAGGCCGAC ACCCGGCAGG TCCAGATGAG CCTGATGGTG TTCTTCGTCG CGCTGGGCGT CTGCCAGCTG GTCTACGGGC CGCTGAGCGA CCAGTTCGGC CGCAAGCCGC CGCTGTATTT CGGCCTGCTG CTGTTCGCCG CGGGCAGCAT CGGCTGCGCG CTGGCGACCG ACATCGAGAC GCTGATCGCC TTCCGCTTCA TCGCCGGCGT GGGCGCCTGC GCCGGCATGG TGGTGCCGCG CGCGATCGTG CGCGACCTGC ACACCGGCGT CGAAGCGACC CGGCTGACCT CGCTGCTGAT GCTGGTGTTC AGCGTCTCGC CGATCCTGGC GCCGCTGGCG GGCAGCGCGA TGATCGCCGT GGCCGACTGG CGCGGCATCT TCTGGGCCAC GATGGTGGCC GCCGTGCTGG CGGTGGCGAT GATGGCGGCC TGGCTGACCG AGAGCCGCCC GCGCGCCGCG CGCCAGGACA GCAACCTGCG CAGCGCGCTG GCGGCCTACG GCCAGCTGCT GCGCGACCGC CACTTCATGG GCCTGACCTT GATCGGCGCG TTCGCGATGT CGGGTTTCTT CGCCTACCTG GCCAACTCGT CGTTCGTGCT GATCGAGCAT CACGGCCTGA CGCCGGCGCA ATACAGCCTG TGCTTCTCGG CCAACGCCGC CGCCTTCATC GGCACGGCGC AGTTCACCGG CCGGCTGGTG CAGCGCCTGG GCCTGCCGGG CGTGGTGCGG CGCGGCGTGA TGGGCTTCAG CGCCTTCGCC TTCGTGCTGT GGCTGTGTTA CGCCGCCGGC GCCGACTCGC TGGCGCTGCT GCTCGTGCTG GTGTTCCTGA GCTTCGGTTT CCTCGGCCTG GTGGTGCCCA CCACCGCGGT GCTGGCGCTC GAGGAACACG GCGAGATCGC CGGCACCGCC TCGGCCCTGC TCGGCACGCT GCAGATGGTG ACCGGCGCGC TGGTGATGGG CGCGATCTCG CTGTTCGTCG ACGGCAGCGC GCGACCGATG GTGCACGGCA TCGCCGCCTG CGCGCTGATC ACGGCGGTGC TGACGCATTT CACGCTCGCG GGCGTGCAGC GCGCCCCGGC GGCGGCCACC TGA
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Protein sequence | MTRSLLRHAL ILGLLSAIGP FAIDMYLPAL PTIGQALQAD TRQVQMSLMV FFVALGVCQL VYGPLSDQFG RKPPLYFGLL LFAAGSIGCA LATDIETLIA FRFIAGVGAC AGMVVPRAIV RDLHTGVEAT RLTSLLMLVF SVSPILAPLA GSAMIAVADW RGIFWATMVA AVLAVAMMAA WLTESRPRAA RQDSNLRSAL AAYGQLLRDR HFMGLTLIGA FAMSGFFAYL ANSSFVLIEH HGLTPAQYSL CFSANAAAFI GTAQFTGRLV QRLGLPGVVR RGVMGFSAFA FVLWLCYAAG ADSLALLLVL VFLSFGFLGL VVPTTAVLAL EEHGEIAGTA SALLGTLQMV TGALVMGAIS LFVDGSARPM VHGIAACALI TAVLTHFTLA GVQRAPAAAT
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