| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4167 |
|---|
| Symbol | |
|---|
| ID | 6162704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4669138 |
|---|
| End bp | 4671876 |
|---|
| Gene Length | 2739 bp |
|---|
| Protein Length | 912 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641666944 |
|---|
| Product | type III restriction protein res subunit |
|---|
| Protein accession | YP_001793183 |
|---|
| Protein GI | 171060834 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3421] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGC GCGAAGTCAA TGCCATCGCG GGCCGCTTGA GCCTGCGCCA ACCGCAATCC
GAATCCCTGG CCAGATTGGC CCGAGCGATC GACGCCAGCC CCGGCATGCT CCAACATGAC
CGCGATGCCG CCGACGTGGC AGCGGTGCTC GACACCTTGA AGGGCCAGTT TCCGACGCTG
CAGGACTTTG AGCGCGAGTT TCCGTCGCTG TGTTTTGCGC TCGCCACCGG CGTGGGCAAG
ACGCGCTTGA TGGGGGCGTT CATCAGCTAC CTGTTCCAGG CGCACGGCAT CAAGCACTTC
TTCGTGCTGG CGCCCAACCT GACGATCTAT GACAAGCTGA CCGGTGACTT CACGCCCAAC
ACGCCCAAGT ACGTGTTCAA GGGCGTGGCC GAGTTCACCT CTCATCCGCC CGAGATCATC
ACCGGTGACA ACTACGAGGA GCGCGCCCAG GCGCTGGGCG ATTTGCTCTC GCCGGTGACG
ATCAACATCT TCAACATCGC CAAGATCGCG ACCGAGGTGC GCGGCGGCAG GGCGCCACGC
ATCAAGCGCC TGAGCGAGTA CATCGGCCAG AGCTATTTCG ATTACCTGGC CGGCCTGCCC
GATCTGGTGC TGTTGATGGA TGAATCGCAT CGCTACCGCG CCACGGCGGG GCTGCGCGCC
ATCAATGAAT TGAAGCCGCT GATCGGCCTC GAATTGACGG CCACACCGTT CACCGAAACC
ACCAAAGGCC CGGTTGCCTT CAAGAACGTG GTGATGGATT ACCCACTGGC CCGGGCGATG
GAAGATGGCT TCGTGAAAGA GCCGGCGGTG GTGACGCAGC GCAACTTCGA CGCGCGCAAC
ATGCCGCCCG AAGAGGTGGA GCGCGTCAAG CTGCAAGACG GCGTGCGCAT GCACGAGGCC
ACCAAGGTCG AATTGAATAC CTATGCGCGC ATGCAGGGTG TGAAAGTGGT CAAGCCTTTC
ATGCTGGTGA TTGCGCGCGA CACCACACAC GCCGGCGCTT TGCTGGCCTC GCTGCAGAGA
GATGATTTTT TTGGCGGCCG CTACCGCCAC AAGGTCATCC AGGTGGACAG CAGCAAATCC
GGCGCCGAAG AAGAGGAAAT GATCCGTCGG CTGCTGGCGG TTGAGAGCGT GAACGAGCCG
ACCGAGATCG TCATCCACGT CAACATGCTC AAAGAAGGCT GGGACGTCAC CAATCTGTAC
ACCATCGTGC CCTTGCGTGC GGCCAATGCA CGCACGCTGG TGGAGCAGTC GATCGGTCGG
GGCCTGCGGC TGCCGTATGG CAAGCGCACC GGCGTGGATG CGGTCGACCG GCTCAACATC
ATTGCGCACG ACCGGTTTCA GGAAATCATC GACGACGCCA ATCGGGCTGA TTCGTCGATC
CGATTGAAAA CGCTGATCCT GGAAGCGCCG GGTGCGGTCG ATGAACGCAG CATCAGCATG
ACGGTCAAGC CCAATCTGGT GAGCCTCCTG GGGCCGGCTG ATGAGGCGTT GAACACGGGC
ACCGATTCAC CAGCCTACGC CAACGCAAGC CCGGTCACCG CTGCTTCTGT TTTCAGCGCG
CCGCAGGAGT TCGAGGCTTG CGCGCTGGTG ATGGAGGCGA TGGGGCGTTA CGAGACCCGC
ACGCAAGACG CGCCCACTCG CCGTGCGTTC CTGACGCCGC AGTTGCAGGC GCAGATCGCC
GACGAGGTGA AGGAGCGCTT GCCGCCCGTG CAAGCCAGCC TGTTGAGCGG CGCCGATGCG
CCCCTCGAAC TAGATCTGGC CGACGTGATC CGCCGCACGG TGGACGTGGT GGTGCGCCAG
ACCATCGACA TCCCACGCAT TGCCGTGGTG CCTAAAGGCG TGGTCACGAG CGGGTTCAAG
CCCTTCACGC TGGACGTGGC CGGACTGCAC CTGCAGCCGA AAGACCGCTC ACTGGTCGGG
CAGACGCTGC GCACACACGC GCAGTTCACG CTGTCAGCCC AAAGCGGGCG CGCCGAGCGC
CGGCTGGAGG ACTATATCGT CCACGCGCTG ATCGATTTCG ACGACATCGA CTACACCGTG
CACGCCAGCC TCTTGTATGA CCTGGCGGGC CAGATGGTGG CGCACTTGCG CAGCTATCTG
AGCGACGAGA ACGACGTGCG CAATGTGCTC GACCTGGATC GGCTTGTGAT TGCAAAGAAC
ATCCACGCCC AGATGGCGGA GCATTTCTAC GAGTCGGCTA CCGAATATGC GGTTGAAGTG
CGGCGCGGAT TCACGGCCTT GAAAGAGCCC ACCTACACCG TGGCTGTGGG CCAGCCTGTG
CGCAACTACC GCGAGACCGT GGACGAGCCC GGCCGCATCA AGCAGATGGT GTTCGGGTCA
TTCAACAAGT GCTTGTATCC GCTGCAGAAG TTCGATTCCG ATACCGAGCG GCGCTTTACC
GTGATCCTGG AGCGCGACGC CGAAAAGTGG TTCAAACCGG CCAAGGGTCA GTTTCAGATC
TTCTACAAGC TGGGTACTGA GCAGCCGGAA TACGTGCCTG ACTTCGTGGC TGAAACACCG
CAGTATGTAT TGATGGTCGA GACCAAGGCG CGCAATGAAC TTCAGGCGGC TGATGTCCTT
GCCAAGGCGC AAGCCGGTGC GCTGTGGTGT CACCACGCTT CGACGCACGC ACACAGCGTG
GGCGCCAAGC CGTGGAAGTA CCTGCTGATT CCGCACGACC AAGTCACAGA AGACAAGCGC
CTGACGGATT TTCTGGGCTT TGCGCAGCGC ACGAAGTAA
|
|---|
| Protein sequence | MSQREVNAIA GRLSLRQPQS ESLARLARAI DASPGMLQHD RDAADVAAVL DTLKGQFPTL
QDFEREFPSL CFALATGVGK TRLMGAFISY LFQAHGIKHF FVLAPNLTIY DKLTGDFTPN
TPKYVFKGVA EFTSHPPEII TGDNYEERAQ ALGDLLSPVT INIFNIAKIA TEVRGGRAPR
IKRLSEYIGQ SYFDYLAGLP DLVLLMDESH RYRATAGLRA INELKPLIGL ELTATPFTET
TKGPVAFKNV VMDYPLARAM EDGFVKEPAV VTQRNFDARN MPPEEVERVK LQDGVRMHEA
TKVELNTYAR MQGVKVVKPF MLVIARDTTH AGALLASLQR DDFFGGRYRH KVIQVDSSKS
GAEEEEMIRR LLAVESVNEP TEIVIHVNML KEGWDVTNLY TIVPLRAANA RTLVEQSIGR
GLRLPYGKRT GVDAVDRLNI IAHDRFQEII DDANRADSSI RLKTLILEAP GAVDERSISM
TVKPNLVSLL GPADEALNTG TDSPAYANAS PVTAASVFSA PQEFEACALV MEAMGRYETR
TQDAPTRRAF LTPQLQAQIA DEVKERLPPV QASLLSGADA PLELDLADVI RRTVDVVVRQ
TIDIPRIAVV PKGVVTSGFK PFTLDVAGLH LQPKDRSLVG QTLRTHAQFT LSAQSGRAER
RLEDYIVHAL IDFDDIDYTV HASLLYDLAG QMVAHLRSYL SDENDVRNVL DLDRLVIAKN
IHAQMAEHFY ESATEYAVEV RRGFTALKEP TYTVAVGQPV RNYRETVDEP GRIKQMVFGS
FNKCLYPLQK FDSDTERRFT VILERDAEKW FKPAKGQFQI FYKLGTEQPE YVPDFVAETP
QYVLMVETKA RNELQAADVL AKAQAGALWC HHASTHAHSV GAKPWKYLLI PHDQVTEDKR
LTDFLGFAQR TK
|
|---|
| |