Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4158 |
Symbol | |
ID | 6161161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4661533 |
End bp | 4662462 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666935 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001793174 |
Protein GI | 171060825 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTACA AGCACCTCCA CTACTTCCTG CAGGTGGCCA AGCTGGGCGG CGTGCTGCGC GCCAGCGAGC AGCTGCACCT GTCGCCGCAG ACGATCAGCG GGCAGATCCA GCTGCTCGAA GAGGCGCTCG GCACGCCGCT GTTCGCCCGC AGCGGGCGCG GCCTGGCGCT GACCGAGGCC GGGCGCATGG TGCTCGGTTA CGCCGAGGAC ATCTTCTCGA TCGGCACCGA GCTCGCGGAG GCGGTGCGCG ACTTTCCCCG CCAGGGCAAG CTGCTGGCCT TGCGCATCGG CGTGGCCGAC GCCGTGCCGA AGGCGATCGC CTGCCGGCTG ATCGAGCCGG CCACGCAGCT GCCCGAGCCG GTGCGCATCG TCTGCCGCGA ATGGAAGCTC GACACGCTGC TTGCCGAGCT GGCCCTGCAC CGGCTGGACC TGGTGATCGC TGATGCGCCG ATCCCGCGTG ACGTCAGCGT GCGCGCCTTC AACCACCGGC TGGGCAGCAG CGGCGTCAGC TTCTTCGCGG CGCCGTCGCT GCTGGCGTCG TGCACGGGGC CTTTTCCGGC CTGCCTGGAC GGCGCGCCGC TGCTGCTGCC GGCCGAGGAG TCGGCGGTCG GCCAGCGCCT GCGGGCCTGG CTGCATGCGC GGTCGCTGCG CCCCCGGGTG GTCGGCGAGT GCGACGACAG CGCCCTGGCC AAGGAGTTCG GGCGCCGCGG CATGGGCATC TTCGTCGGCT CCACCGTGCT CGAGCGCGAC ATCGAGAAGC AGTACGGCGT GCGCGTGCTC GGCGCGGCGC CCGAGGTCAT GGAGGAGTTC TTCGCGATCA CGGTCGAGCG CCGCATCACG CATCCGTGCG TGACGGCGAT CACCGAGGCG GCCCGCAACG AGCTGTTCGC ACCGCCCGCA CGGCGGCGTG CCCGGCCCGC CGCCGCCTGA
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Protein sequence | MNYKHLHYFL QVAKLGGVLR ASEQLHLSPQ TISGQIQLLE EALGTPLFAR SGRGLALTEA GRMVLGYAED IFSIGTELAE AVRDFPRQGK LLALRIGVAD AVPKAIACRL IEPATQLPEP VRIVCREWKL DTLLAELALH RLDLVIADAP IPRDVSVRAF NHRLGSSGVS FFAAPSLLAS CTGPFPACLD GAPLLLPAEE SAVGQRLRAW LHARSLRPRV VGECDDSALA KEFGRRGMGI FVGSTVLERD IEKQYGVRVL GAAPEVMEEF FAITVERRIT HPCVTAITEA ARNELFAPPA RRRARPAAA
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