Gene Lcho_4158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4158 
Symbol 
ID6161161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4661533 
End bp4662462 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content72% 
IMG OID641666935 
ProductLysR family transcriptional regulator 
Protein accessionYP_001793174 
Protein GI171060825 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTACA AGCACCTCCA CTACTTCCTG CAGGTGGCCA AGCTGGGCGG CGTGCTGCGC 
GCCAGCGAGC AGCTGCACCT GTCGCCGCAG ACGATCAGCG GGCAGATCCA GCTGCTCGAA
GAGGCGCTCG GCACGCCGCT GTTCGCCCGC AGCGGGCGCG GCCTGGCGCT GACCGAGGCC
GGGCGCATGG TGCTCGGTTA CGCCGAGGAC ATCTTCTCGA TCGGCACCGA GCTCGCGGAG
GCGGTGCGCG ACTTTCCCCG CCAGGGCAAG CTGCTGGCCT TGCGCATCGG CGTGGCCGAC
GCCGTGCCGA AGGCGATCGC CTGCCGGCTG ATCGAGCCGG CCACGCAGCT GCCCGAGCCG
GTGCGCATCG TCTGCCGCGA ATGGAAGCTC GACACGCTGC TTGCCGAGCT GGCCCTGCAC
CGGCTGGACC TGGTGATCGC TGATGCGCCG ATCCCGCGTG ACGTCAGCGT GCGCGCCTTC
AACCACCGGC TGGGCAGCAG CGGCGTCAGC TTCTTCGCGG CGCCGTCGCT GCTGGCGTCG
TGCACGGGGC CTTTTCCGGC CTGCCTGGAC GGCGCGCCGC TGCTGCTGCC GGCCGAGGAG
TCGGCGGTCG GCCAGCGCCT GCGGGCCTGG CTGCATGCGC GGTCGCTGCG CCCCCGGGTG
GTCGGCGAGT GCGACGACAG CGCCCTGGCC AAGGAGTTCG GGCGCCGCGG CATGGGCATC
TTCGTCGGCT CCACCGTGCT CGAGCGCGAC ATCGAGAAGC AGTACGGCGT GCGCGTGCTC
GGCGCGGCGC CCGAGGTCAT GGAGGAGTTC TTCGCGATCA CGGTCGAGCG CCGCATCACG
CATCCGTGCG TGACGGCGAT CACCGAGGCG GCCCGCAACG AGCTGTTCGC ACCGCCCGCA
CGGCGGCGTG CCCGGCCCGC CGCCGCCTGA
 
Protein sequence
MNYKHLHYFL QVAKLGGVLR ASEQLHLSPQ TISGQIQLLE EALGTPLFAR SGRGLALTEA 
GRMVLGYAED IFSIGTELAE AVRDFPRQGK LLALRIGVAD AVPKAIACRL IEPATQLPEP
VRIVCREWKL DTLLAELALH RLDLVIADAP IPRDVSVRAF NHRLGSSGVS FFAAPSLLAS
CTGPFPACLD GAPLLLPAEE SAVGQRLRAW LHARSLRPRV VGECDDSALA KEFGRRGMGI
FVGSTVLERD IEKQYGVRVL GAAPEVMEEF FAITVERRIT HPCVTAITEA ARNELFAPPA
RRRARPAAA