| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4151 |
|---|
| Symbol | |
|---|
| ID | 6164049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4656101 |
|---|
| End bp | 4657144 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666929 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001793168 |
|---|
| Protein GI | 171060819 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCGT TGCTGGAACG CCAGGGGCTC GTGGAGATGG TCAAGACCGC ACAGGCCAGC
GGCGCGCGCC TGCACAGCGC GTGCGCGGAG GTGGGCGTGT CGGTGCGCAC GTACCAGCGC
TGGATCGACG GTGGTGAGGT GCAGGCCGAC GGCCGGCCGG GGGCGGTGTG GGCGCAGCCG
AGCAACAAGC TCAGCGGCGA CGAACAGCGC GCGGTGCTCG ATGCGTGCAT GCAGCCGCGC
TTTGCCGACC TGCCGCCCAC GCAAATCGTG CCGGCCCTGG CCGACGAGGG GACCTATCTG
GCCAGCGAGT CGACCTTCTA CCGGCTGCTG CATGCGCACG GCGCGCAGCA GCACCGGGGA
CGTGCTCGAC AGCGCAGCCA CAAGCCCGCG CCGATGCACG TGGCGCACGC GCCCAACGAA
GTCTGGTGCT GGGACGTGAC CTACCTGCCC AGCCAGGTGC GGGGGCTGTT CTTCTACCTG
TACGCCGTCA TCGACCTGTA CAGCCGCAAG CTGGTGGCCT GGGAGGTGCA TGCCAGCGAG
AACGCTGACC TGGCCGCCGA GCTCGTCGAG CGGGCGCGCT GGCGTGAGAA GCTCGCGGGC
AAGCCGCTGG TGCTGCACGC CGACAACGGC GCGGTGCAGC GCTCGCACAC GCTGCGCGCC
AAGCTGCAGG ATCTGGGCAT CGCGCCCAGC TACAGCCGAC CCGGCGTGAG CGACGACAAC
GCCCTCATCG AGTCGTGGTT CCGCACGCTC AAGTACATGC CGACCTTCCC GAGCACCGGG
TTCGGCGAGC TTGATCAGGC GCGAAACTGG TGTCGCACGT TCATCGATTG GTACAACGGC
GAGCATCGCC ATCGAGAGAT CGGCTTCGTG ACGCCGAACC AGCGCCACAG CGGGCAGAGC
AAGGCGGTGC TAAGGCAGCG GCGCGCGGTC TACCAGGCCG CCCGGGAAGC CAACCCCAGC
CGCTGGAGCC GAGAGATCCG CAGATGGAGC GAGCCTGATC ACGTCTGTCT CAACCCGCGT
GACAAGGAGC GTCAAGCCGC ATAG
|
|---|
| Protein sequence | MTALLERQGL VEMVKTAQAS GARLHSACAE VGVSVRTYQR WIDGGEVQAD GRPGAVWAQP
SNKLSGDEQR AVLDACMQPR FADLPPTQIV PALADEGTYL ASESTFYRLL HAHGAQQHRG
RARQRSHKPA PMHVAHAPNE VWCWDVTYLP SQVRGLFFYL YAVIDLYSRK LVAWEVHASE
NADLAAELVE RARWREKLAG KPLVLHADNG AVQRSHTLRA KLQDLGIAPS YSRPGVSDDN
ALIESWFRTL KYMPTFPSTG FGELDQARNW CRTFIDWYNG EHRHREIGFV TPNQRHSGQS
KAVLRQRRAV YQAAREANPS RWSREIRRWS EPDHVCLNPR DKERQAA
|
|---|
| |