| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4117 |
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| Symbol | |
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| ID | 6163011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4623181 |
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| End bp | 4624578 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666895 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001793134 |
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| Protein GI | 171060785 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.167574 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATC TGAATGTGCT GGTCGTCGAC GACGAGCCAG CCGTCAGGCA AGTCCTGTCC
GCCGCCATCG GCAAGGCCGG TTACCCGGTC GAGATGGCCG GCAGTGCCGC CGAAGCCCTG
GCCAAGCTCG ACAAGACGCC CTTCGACGTA GTCCTGAGCG ATGTCTTCAT GCCGATCACC
GACGGCATCG AGTTGCTGCG CCAGGCGCGC ACGCGCGGCC ACAACGCCAC CTTCATCATG
GTGACGGCCT TCAGCTCGGT CGACTCGGCG ATCGACGCCA TCAAGGCCGG CGCCTGGGAC
TACATCACCA AGCCGGTCCG CAACGAGGAG ATCGTGCACC GGCTGGAGCA GATCGACGCG
CTGCGCGGCC TGCGCGAGGA AAACCGCGCC CTGCGCAGCC TGGTGCTGGG CGGCGGCCAG
CCGGCGTTCC AGTTCAACTC GCCGGCCATG CAGGCCACCG AGCGCTTGAT CAGCCGGGTC
GCGCCGACCG ACAGCACGGT GCTGATCAGC GGCGAGAGCG GCACCGGCAA GGGCGTGACG
GCGCGCCGCA TCCACGAGCT GTCACCGCGC CGCGACGGGC CGTTCGTGGC TGTCAACTGC
GGCGCCATCC CCGAGAACCT GATCGAGAGC GAGCTGTTCG GCCACACCAA GGGCGCCTTC
ACCAGTGCCG ATCGGGCGCG CCGCGGCCTG TTCATGCAGG CCGACCGCGG CACCATCTTC
CTCGACGAGA TCGGCGAGCT GCCGCTGTCG ATGCAGACCA AGCTGCTGCA CGTGATCGAG
GCCAAGGAGG TGCGGCCGCT GGGCGCCGAA CAGAGCCGCA AGGTCGACGT GCGCATCATC
GCCGCCACCA ACCGCGACCT GCCGGCGTTC GTGGCGCAGG GGCGCTTCCG CGAGGACCTG
TTCTTCCGCC TGTCGGTGTT CCAGATCGGC ATGCCGGCGC TGCGCGAGCG GCGCGCCGAC
ATCCCCGGCC TGATGCGGCA TCTGATGGCG CAGCGCGAGC TGCCGTCGGG CTCCGGCGCC
AGTGCAGGCC AGGCGCTGAC CATCGACCCT GAGGCCGAGG ACATGCTGAT CGCCTTCAGC
TGGCCCGGCA ACGTGCGCCA GCTCGAGAAC GTGCTGCACC GCGCCGCCAT CCTGGCCGAC
GGCGGCTGCA TCCACGCCGC CGACCTGCCG CCCGAGGTGT CGCGGGTACC GGCGCTCGGC
CCGGCCAGCG CGCCGAGCGC CGAGGCCAGC GAGTGCAGCC TGCGCGAGCG GGTGCGGCGC
TTCGAGGTCT CGCTGATCCG GCGCGCCATC GAGGAGGCCG GCGGCGACCG CCGCCTGGCC
GCGCAGCGGC TGGGCATCGG GCTGTCGAGC CTGTACCGCA AGCTTGACGA GTTCGGCGCC
GATCCGGCCG CAGGCTGA
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| Protein sequence | MSDLNVLVVD DEPAVRQVLS AAIGKAGYPV EMAGSAAEAL AKLDKTPFDV VLSDVFMPIT
DGIELLRQAR TRGHNATFIM VTAFSSVDSA IDAIKAGAWD YITKPVRNEE IVHRLEQIDA
LRGLREENRA LRSLVLGGGQ PAFQFNSPAM QATERLISRV APTDSTVLIS GESGTGKGVT
ARRIHELSPR RDGPFVAVNC GAIPENLIES ELFGHTKGAF TSADRARRGL FMQADRGTIF
LDEIGELPLS MQTKLLHVIE AKEVRPLGAE QSRKVDVRII AATNRDLPAF VAQGRFREDL
FFRLSVFQIG MPALRERRAD IPGLMRHLMA QRELPSGSGA SAGQALTIDP EAEDMLIAFS
WPGNVRQLEN VLHRAAILAD GGCIHAADLP PEVSRVPALG PASAPSAEAS ECSLRERVRR
FEVSLIRRAI EEAGGDRRLA AQRLGIGLSS LYRKLDEFGA DPAAG
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