Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4114 |
Symbol | |
ID | 6163008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4620510 |
End bp | 4621643 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666892 |
Product | two component regulator propeller domain-containing protein |
Protein accession | YP_001793131 |
Protein GI | 171060782 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0168145 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTCGGC GTTTCAGGCT CTTTGCGGCC ACCCTCATCG GCTTGGGCGT GGCGTTCGGC GCGTGGGCGC AGGCGGCCCG GCCGGCTCCT GCTGCCGCTG CGGCGGCCTC CGCCGCGGCG CAGAAGTTCA CCCACTTCCG GGTCGGCAAC AAGAACGTCA AGCGCCTGTT CGTCGACGGC GATGTCGTCT GGGTCGGCAC CTCCGGCGGC GTGGTGCGCT ACGACACCCG CAGCGACGAC TACAAGCTGT TCGACGTCAA GAGCGGCCTG CTGTCCAACG GCGTGTTCCA CGTCGGCAAG CTCGACGGCC GCATCGTCGT CGGCACCTAC GGCGGCGGGC TGTCGCTGCT CGACCCCGTC ACCGAAAAAT GGCAGACCTA CAACATCCCC GAAGGCCTGG GCGACGCCTT CGTCTACGAC GTGCTGAAGG CCAAGAACGG CGACGTCTGG ATCGCCACCT GGTCGGGCGT GAACCGGGTG CGCGGCGGCC GGCTCGATGA CCGCTCGCAG TGGGAGCTGC ACACGGTGGA AAGCACCCGC GGCGGCCTGC CCAACGACTG GGTCTACGGC CTGGCCGAAG GGCGCGACGG CGAGATCTGG CTCGGCACCG AAGGCGGCCT GGCGCAATTC AAGGACGGCA CCTGGCAGAA CTGGAACCAC GCCCGCGGCC TGGGCGCCGA CTACGAACGC GTCAAGGACC AGGTGCGCTT CAAGACCGAC CCGGCCAAGG TCTCCGAGCA CCACGCGCGC CAGAAGCAGG AGATGGGGCT GCAGGACATC CAGGTCGCCT ACAACCCGAA CTACATGGTG TCGCTGGCGG TCGACGCGCA GGGTGTCGTC TGGGCCGGCA CCTGGGGCGG CGGGCTGTCG CGCTTCGACG GCACCACATG GACCTCGTAC ACCGTCGCCG AAGGCCTGCC CGGCAACCAC GTGTTCATGC TGCACATCGA CCCGTTGGGC GTGCTGTGGG TCGGCACCGA CAACGGCCTG GCGAAGATGA ACGGTGGCCG CTTCGAGGTG CTGACCACCG TCGACGGCCT GTTCAGCAAC ACCATCTTTT CGATGACCAC GGCGCTCGAC GGCACGTTGT GGGTCGGCAG CTTCGGCGGT GTCGCCCGAC TCAAGCCGTT CTAG
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Protein sequence | MVRRFRLFAA TLIGLGVAFG AWAQAARPAP AAAAAASAAA QKFTHFRVGN KNVKRLFVDG DVVWVGTSGG VVRYDTRSDD YKLFDVKSGL LSNGVFHVGK LDGRIVVGTY GGGLSLLDPV TEKWQTYNIP EGLGDAFVYD VLKAKNGDVW IATWSGVNRV RGGRLDDRSQ WELHTVESTR GGLPNDWVYG LAEGRDGEIW LGTEGGLAQF KDGTWQNWNH ARGLGADYER VKDQVRFKTD PAKVSEHHAR QKQEMGLQDI QVAYNPNYMV SLAVDAQGVV WAGTWGGGLS RFDGTTWTSY TVAEGLPGNH VFMLHIDPLG VLWVGTDNGL AKMNGGRFEV LTTVDGLFSN TIFSMTTALD GTLWVGSFGG VARLKPF
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