Gene Lcho_4108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4108 
SymbolpyrF 
ID6160659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4613254 
End bp4614108 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content70% 
IMG OID641666886 
Productorotidine 5'-phosphate decarboxylase 
Protein accessionYP_001793125 
Protein GI171060776 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.000000980823 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACTTCA TCGACCAACT CGCCCGCGCC GAGCGGCTGC ACGACTCGCT GCTGTGTGTC 
GGCCTCGACC CGGAGCCGGG CAAGTTCCCC GGCGCCTGGA AAGGCGACGC CGGCAAGATC 
TTTGACTTCT GCGCCGCCAT CGTCGATGCC ACCAAGGACC TGGTGATCGC GTTCAAGCCG 
CAGATCGCCT ACTTCGCGGC GCATCGCGCC GAAGACCAGC TTGAGCGCCT GATGGCCTAC 
ATCAAGCGCA CGGCGCCGGA TGTGCCGGTG ATCCTCGACG CCAAGCGCGG CGACATCGGC 
TCGACCGCCG AGCAGTACGC CCGCGAGGCC TTCGAGCGCT ACCAGGCCGA TGCGGTGACG 
CTGTCGCCGT TCATGGGCTT CGACTCGATC GAGCCCTATC TGCGTTACGC CGACAAGGGC 
GTGATCCTGC TGTGCCGCAC CTCGAATCCG GGTGGCAACG ACTGGCAGAT GCAACGTCTG 
GCCGACGTGC CGGGCCAGCC GCGGCTGTTC GAGCACCTGG CGCATCGGGC GCAGACCGAA 
TGGAACCGCA ACGGCCAGCT CGCGCTGGTG GTGGGCGCGA CCTACCCGGC CGAGATCGCC 
CGCGTGCGTG AACTGGCGCC GACGCTGCCG CTGCTGATCC CCGGCGTGGG CGCGCAGGGC 
GGTGACGCGC AGGCCACCGT GCAGGCCGGC CTGGTGTGCG ACGCCAGCGG CGCGAGCACC 
GGCCCGATCA TCGTCAACAG CTCGCGCGCG GTGCTCTACG CCAGCGCGGG CGACGACTTC 
GCGCAAGCCG CCCGCCGCGT GGCGCTGGCC ACGCGCGACG CGCTCAACGC AGCGTCTGCT 
GCAGCCAGGC GCTGA
 
Protein sequence
MNFIDQLARA ERLHDSLLCV GLDPEPGKFP GAWKGDAGKI FDFCAAIVDA TKDLVIAFKP 
QIAYFAAHRA EDQLERLMAY IKRTAPDVPV ILDAKRGDIG STAEQYAREA FERYQADAVT 
LSPFMGFDSI EPYLRYADKG VILLCRTSNP GGNDWQMQRL ADVPGQPRLF EHLAHRAQTE 
WNRNGQLALV VGATYPAEIA RVRELAPTLP LLIPGVGAQG GDAQATVQAG LVCDASGAST 
GPIIVNSSRA VLYASAGDDF AQAARRVALA TRDALNAASA AARR