Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4104 |
Symbol | |
ID | 6160062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4609533 |
End bp | 4610483 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641666882 |
Product | peptidase M48 Ste24p |
Protein accession | YP_001793121 |
Protein GI | 171060772 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0000000775761 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGATT CTTTTGTCAC CGACGCCGAG ATCCTCACGC CGATCGAGCT GCATCGCGGC GCCTGCGGTT GCCCGTTGCA CGGCCCGCAT GCGGGCGGAC ATGCGCCCGT GCGCGGCCGC CGGCTCTTCA CCGGCCTGCT GCTGGGCGCG GGTGCCGCGG CGGCGCTGCC GGCCTGGGCG CGCGAGGGGG TCGACGTGGG CGGCAACTCC AAGTTCACCA AGCTGGTGTC GGCCGAGCAG GTCGAAGAGG CCGCCGTGCA GAACTACAGC CAGCTGCGCC AGGAGGCCAC CAGCAAGGGC GCGCTGGCGC CCGACAGTCA CCCGCAGATG GTCCGCCTGC GCGCGATCGC CGAGCGGCTG ATCCCCTACA CCTACGAGTG GAACCCGCGC GCCAAGGGCT GGAAGTGGGA GGTCTCGCTG ATCGGCAGCA AGCAGATCAA CGCCTTCTGC ATGCCCGGCG GCAAGATCGC CTTCTACACC GGCATCCTGC AGCAGCTGCA GTTGAGCGAC GACGAGGTGG CGATGATCAT GGGCCACGAG ATGGCCCATG CGCTGCGCGA ACACGCCCGC GAGCGCATGG GCAAGACGGC GGCCACGCAG GGCGTGATCG GCCTGGGCGC GGCGCTGCTG GGCCTGGGCG ACCTGGGCCG CACGGTGGCC GATGCCGGCG GCCAGCTGCT GACGCTCAAG TTCAGCCGCG ACAACGAGAC CGAGGCCGAT CTGGTCGGCA TGGAACTGGC CGCCCGCGCC GGCTACGACC CGGCCTCGGG CGTGACGCTG TGGCAGAAGA TGATGGAAGC CAACAAGGGC GCGCCGCCGC AGTTCCTGTC GACCCACCCG TCGAGCGACA CCCGCATCAA GGAGATGCAG GCCAGCCTGC CGAAGGTGGC CGGCCTCTAC CAGCGCGCGG CCAAGCCGGC GCGGCGTTTC GGGCCGCCAG CCGCGGGTTG A
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Protein sequence | MTDSFVTDAE ILTPIELHRG ACGCPLHGPH AGGHAPVRGR RLFTGLLLGA GAAAALPAWA REGVDVGGNS KFTKLVSAEQ VEEAAVQNYS QLRQEATSKG ALAPDSHPQM VRLRAIAERL IPYTYEWNPR AKGWKWEVSL IGSKQINAFC MPGGKIAFYT GILQQLQLSD DEVAMIMGHE MAHALREHAR ERMGKTAATQ GVIGLGAALL GLGDLGRTVA DAGGQLLTLK FSRDNETEAD LVGMELAARA GYDPASGVTL WQKMMEANKG APPQFLSTHP SSDTRIKEMQ ASLPKVAGLY QRAAKPARRF GPPAAG
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