Gene Lcho_4104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4104 
Symbol 
ID6160062 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4609533 
End bp4610483 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content71% 
IMG OID641666882 
Productpeptidase M48 Ste24p 
Protein accessionYP_001793121 
Protein GI171060772 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0000000775761 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGATT CTTTTGTCAC CGACGCCGAG ATCCTCACGC CGATCGAGCT GCATCGCGGC 
GCCTGCGGTT GCCCGTTGCA CGGCCCGCAT GCGGGCGGAC ATGCGCCCGT GCGCGGCCGC
CGGCTCTTCA CCGGCCTGCT GCTGGGCGCG GGTGCCGCGG CGGCGCTGCC GGCCTGGGCG
CGCGAGGGGG TCGACGTGGG CGGCAACTCC AAGTTCACCA AGCTGGTGTC GGCCGAGCAG
GTCGAAGAGG CCGCCGTGCA GAACTACAGC CAGCTGCGCC AGGAGGCCAC CAGCAAGGGC
GCGCTGGCGC CCGACAGTCA CCCGCAGATG GTCCGCCTGC GCGCGATCGC CGAGCGGCTG
ATCCCCTACA CCTACGAGTG GAACCCGCGC GCCAAGGGCT GGAAGTGGGA GGTCTCGCTG
ATCGGCAGCA AGCAGATCAA CGCCTTCTGC ATGCCCGGCG GCAAGATCGC CTTCTACACC
GGCATCCTGC AGCAGCTGCA GTTGAGCGAC GACGAGGTGG CGATGATCAT GGGCCACGAG
ATGGCCCATG CGCTGCGCGA ACACGCCCGC GAGCGCATGG GCAAGACGGC GGCCACGCAG
GGCGTGATCG GCCTGGGCGC GGCGCTGCTG GGCCTGGGCG ACCTGGGCCG CACGGTGGCC
GATGCCGGCG GCCAGCTGCT GACGCTCAAG TTCAGCCGCG ACAACGAGAC CGAGGCCGAT
CTGGTCGGCA TGGAACTGGC CGCCCGCGCC GGCTACGACC CGGCCTCGGG CGTGACGCTG
TGGCAGAAGA TGATGGAAGC CAACAAGGGC GCGCCGCCGC AGTTCCTGTC GACCCACCCG
TCGAGCGACA CCCGCATCAA GGAGATGCAG GCCAGCCTGC CGAAGGTGGC CGGCCTCTAC
CAGCGCGCGG CCAAGCCGGC GCGGCGTTTC GGGCCGCCAG CCGCGGGTTG A
 
Protein sequence
MTDSFVTDAE ILTPIELHRG ACGCPLHGPH AGGHAPVRGR RLFTGLLLGA GAAAALPAWA 
REGVDVGGNS KFTKLVSAEQ VEEAAVQNYS QLRQEATSKG ALAPDSHPQM VRLRAIAERL
IPYTYEWNPR AKGWKWEVSL IGSKQINAFC MPGGKIAFYT GILQQLQLSD DEVAMIMGHE
MAHALREHAR ERMGKTAATQ GVIGLGAALL GLGDLGRTVA DAGGQLLTLK FSRDNETEAD
LVGMELAARA GYDPASGVTL WQKMMEANKG APPQFLSTHP SSDTRIKEMQ ASLPKVAGLY
QRAAKPARRF GPPAAG