| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4094 |
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| Symbol | |
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| ID | 6159942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4591633 |
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| End bp | 4593270 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641666872 |
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| Product | polypeptide-transport-associated domain-containing protein |
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| Protein accession | YP_001793111 |
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| Protein GI | 171060762 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00000000416346 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGGCGG GCGAGTGCCT CGCGCGCCGG CTGCGCCGGG TCGCCGCCGG GCTGATCGCG
CTCGGCGCCG CCGCCTCGCC CGCCTGGGCG CAAGACCGGC CCGCTGCGGC GGCGAGCGAG
CCGATGGTGC TGCGCGAATG GCATCTGCAG CCGCTCGAAG GCATCGACGA CGCGACCCTG
CAGCGCCTCA CGCTGCCCTA CCTGCGCAAG CCCTTCGGCG TGGCGCAGGC GCAGCAGCTG
CGCGATGCGC TGCTGGCCGA GATGGCCGCG CGCGGGCTGT CGCTGGGCGG CGCGGCGCTG
CGGGTGCTCG ACGCGCCGCG CGGCATCGTC GCGCTGCAGG TGGTCGAGCC GCGGCTGCGC
CGCATCGAGC TGAGCGCGTC GGCCGATGCG CCGCTGGCCG ACCCCCAGGT GCTGCAGGTG
CTGGCGCGCG AAGGCGTGCA CGACGGCGCC TTGCTCGACC TGCGCCGGCT CGACGCCGCG
ATGTTCGCGC TCAACGACCT GCCCGGCGTG CGCGCCCAGG CCAGCCTGGC GCCCAGCGGC
GACGAGGCGC GCTACGACCT CGTCATCGAG CGTGGCTGGC GCCGCCAGGC CGAAGGCAGC
GTCGACCTCG ACAACCACGG CAGCCGCTTC AACGGCCGCT GGCGCATCGG CGGCCTGCTG
CGCTGGAACG AGCCGCTCGA CCTCGGCGAC AACCTCGACC TGCGCCTGCA GCTGGCCGAG
CAGCGTGGCC TGGCGAGCGC CCGGCTCGCC TACGAGCTGC CGCTCGACCA GCTGCTGCCT
GTCGCCCCGA GCGCCTGGCG CACCAGCCTG GCGCTGTCGG CGCTGAGCTA CGAGCTGGGC
GACGTGTTCG CGCCGCTGCA GGCTCGCGGC CGCGCCCGGG TGATCGACCT CGGCCTGAGC
CGGCCGCTGC AGCGCAGCCG CCAGAGCAAC GTCGTGCTGC GCCTGGGGGC CAGCCACAAG
CGGCTGGAGG ACCGCTTCGA CGCCTTCGGC CTGCGCACCG ACAAGGCCAC CCGCGACGTC
AATCTCGGGC TGTCGTTCGA GGCGCGCGAC GGCTGGGGCG GTGGCGGCTA CAGCGGCGGC
GCGCTGACGC TGCAGGCCGG CTCGCTCGAC ATCCGCAGCC CCGGCGCGCG CGCCGATGAC
GCCGCGCTCG GCACGCGTTC GGCGCAGGGC GGCTTCGGCA AGCTCGGGCT GCAGCTCAAC
CGGCTGCAGG CGCTGCCGCT GCCGGGCTCG ACGGCCTGGT CGGTCTACGG CGGGTTGAGC
GCGCTGTGGG CGAGCAGGAA CCTCGATCCG TCCGAGAAAT TCGCGCTCGG CGGCGCCGGT
GCGGTGCGGG CCTACCCGCC CGGCGAGGCC GCCGCCGACC GCGCGGCGAT CGCCACCGTC
GAGCTGCGCC ACGCCATCGG CGCGCAGTGG AGCGTGTTCG CGCTCGGCGA CTGGGGCCGG
GCGCGGCTGC AGGCCCGGCC GCTGGCGGGC GTCGACAACC AGCGGCGGCT GCGCGCCGCC
GGGCTGGGCG TGTTCTTCAG CGATCCGGCC TGGTTCACGC TGCGCGGCAC GCTGGCCTGG
CCGGGCTCGG CGCCGCGCCT GGCCGAACCC GACGACACCG GGCCGCGCCT GAACCTGCAG
CTGCAACGCG GTTTCTAG
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| Protein sequence | MTAGECLARR LRRVAAGLIA LGAAASPAWA QDRPAAAASE PMVLREWHLQ PLEGIDDATL
QRLTLPYLRK PFGVAQAQQL RDALLAEMAA RGLSLGGAAL RVLDAPRGIV ALQVVEPRLR
RIELSASADA PLADPQVLQV LAREGVHDGA LLDLRRLDAA MFALNDLPGV RAQASLAPSG
DEARYDLVIE RGWRRQAEGS VDLDNHGSRF NGRWRIGGLL RWNEPLDLGD NLDLRLQLAE
QRGLASARLA YELPLDQLLP VAPSAWRTSL ALSALSYELG DVFAPLQARG RARVIDLGLS
RPLQRSRQSN VVLRLGASHK RLEDRFDAFG LRTDKATRDV NLGLSFEARD GWGGGGYSGG
ALTLQAGSLD IRSPGARADD AALGTRSAQG GFGKLGLQLN RLQALPLPGS TAWSVYGGLS
ALWASRNLDP SEKFALGGAG AVRAYPPGEA AADRAAIATV ELRHAIGAQW SVFALGDWGR
ARLQARPLAG VDNQRRLRAA GLGVFFSDPA WFTLRGTLAW PGSAPRLAEP DDTGPRLNLQ
LQRGF
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