| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4092 |
|---|
| Symbol | |
|---|
| ID | 6160214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4587619 |
|---|
| End bp | 4588656 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641666870 |
|---|
| Product | ImpA family type VI secretion-associated protein |
|---|
| Protein accession | YP_001793109 |
|---|
| Protein GI | 171060760 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03363] type VI secretion-associated protein, ImpA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000000185022 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACG TCGACATCGA GGCACTGCTG ACACCGCTGG ACGCCGCCGC GCCCTGCGGC
GCCGACCTCG AATACGACGA GTCCTTCCGC GCGATGGAAG AGGCGCTGCG CGGCAAGCCC
GAGCAGCAGT ACGGCGACAC CGTGATCGCC GCCGAAGGCA GCGACTGGCG CCGCGTGATG
TCGCTCGCGC TCGCGCTCGG CGCCCGCAGC CGCGACCTGC GGGTGGCCGT CAACCTGCTG
CGCGCGCGCC TGCACCTCGA AGGACTTCAG GCCTGCGGCA GCGGCCTGGC GCTGATCCAC
GGCCTGCTCG ATCGCCACTG GCCGCACCTG CACCCGATGC TCGATGCCGA CGACGGCAAC
GACCCGACGA TGCGCCTGAA CGCGCTGGCG CCGCTGGTCG ATCCCGGCGC CGTGCTGGCC
GATCTGCGCA CGGCCACGCT GGGCGGCCCG CGCAGCGGCA TCAGCGGGCG CAGCTTCGAG
CTGGTGGCCG GCAAGGCGCT GCCGCGCGAG GGCGAGAACG TGCTCGGCGC CGATGCCTTC
GTGCAGGCCC TGCGCGAGCT GGAAGCCCGC CAGCCCGGCT GCGTCGAGGC GCTGCGCCAT
GTGGCCGCCA CCACCGATGC GATCGATGCG CTGCTGGTCG CGCAGGTCGG CACCGAAGGC
CCCGATCTCA AGCCGTTGCA GCAGTACACG CAGATGCTGT CTCGCTGGGC GGGGAAGGCG
CTGGCGTCGC AGCCCGCTGC GGCCGGCGAC GTTGCGGTGG ACGCTGCCGT GGACGCCGAT
CCCGACGCCG CACCGGCCGC TGCCGGCGCG GCAGCCGCGG CGGCGCCCGG CGGCGCCATC
CGCAACCGCG AGGACGCCAT CCGCCAGCTG CAGCGGGTGT GCGAGTGGAT CGAGCTCAAC
GAGCCGTCCA ACCCGGTGCC GCTGCTGCTG CGCCGCGCCC AGCGGCTGAT GCGCAAGAGC
TTCATCGACA TCATCCGCGA CCTCGTGCCC GACGGTGTCG GCGCGGTCGA GCACCTGGCC
GGGCCGGCCG ACCCGTGA
|
|---|
| Protein sequence | MSDVDIEALL TPLDAAAPCG ADLEYDESFR AMEEALRGKP EQQYGDTVIA AEGSDWRRVM
SLALALGARS RDLRVAVNLL RARLHLEGLQ ACGSGLALIH GLLDRHWPHL HPMLDADDGN
DPTMRLNALA PLVDPGAVLA DLRTATLGGP RSGISGRSFE LVAGKALPRE GENVLGADAF
VQALRELEAR QPGCVEALRH VAATTDAIDA LLVAQVGTEG PDLKPLQQYT QMLSRWAGKA
LASQPAAAGD VAVDAAVDAD PDAAPAAAGA AAAAAPGGAI RNREDAIRQL QRVCEWIELN
EPSNPVPLLL RRAQRLMRKS FIDIIRDLVP DGVGAVEHLA GPADP
|
|---|
| |