| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4088 |
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| Symbol | |
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| ID | 6160210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4584347 |
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| End bp | 4584871 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666866 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001793105 |
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| Protein GI | 171060756 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00000000845431 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCTGG CCGACATGTT CCTGCGCGTC GAAGGCGGCA AGCAGGGCCT CATCAAGGGC
GAGGTGGTGC AGCCCGATCA CCTCAACGAG ATCGAGGTCA CCGGCTGGTC GTGGGGCATG
GACGGCAGCA GCACGGCCTT CGGCCAGGCC AGCGCGCGCA CCAGCCTGCA GGAACTGGTG
ATCCACAAGC GCGTCGACAG CGCGAGCACC GCGCTGATGT CCGCGCTGCG CAACAACGAG
GTCATCAAGA AGGCGGTGCT GTCGGTGCGC AAGGCCGGCG GCGGCGCGGC GGTGGAGTAC
TTCCACATCA CGATCGAGAA GGCCCGGCTG GTGTCGCACC GCGTCGGCAG CGCCGGCGCC
CCGGGCGCAC ACGCACCGCT GGGCGCCGGG GCCGCGAGCG GCCCCGAGCT GCACGAGGAA
GTGCGCTTCG CGTTCTGGAA GGTGCAGGTC GAATACCGCC CGCAGGATCC GACCGGCGGC
GGGCGCGGCG TCTCGACCTT CGAGACCGAA GTGCAGCAGG CCTGA
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| Protein sequence | MALADMFLRV EGGKQGLIKG EVVQPDHLNE IEVTGWSWGM DGSSTAFGQA SARTSLQELV
IHKRVDSAST ALMSALRNNE VIKKAVLSVR KAGGGAAVEY FHITIEKARL VSHRVGSAGA
PGAHAPLGAG AASGPELHEE VRFAFWKVQV EYRPQDPTGG GRGVSTFETE VQQA
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