Gene Lcho_4087 details

Gene Information

• Locus tag: Lcho_4087
• ID: 6160209
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4583770
• End bp: 4584324
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666865
• Product: type VI secretion system lysozyme-related protein
• Protein accession: YP_001793104
• Protein GI: 171060755
• COG category: [S] Function unknown
• COG ID: [COG3518] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03357] type VI secretion system lysozyme-related protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00000000692593
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCCCTGC AACCCCTGCG CGAGCGCCTC CAGCCGGCCC TGCTCGACCG CCTGAGCGAC 
GACGATCCCG CCAGCGCGGT CGAGGCCGAC GAGCGCCGTT TCATGTCGAA GGCGCAGCTG 
CGTGCCGCGG TGCTGCGCGA CCTCGGCTGG CTGTTCAACG CGGTGCAGCC GCTCGGCGGC 
GGCGCGGCCG AGACCTGGCC GCAGGCCGGT GCGTCGGTGC TCAATTTCGG CCTGCCGCCG 
GTGTCGGGGC AGCTGGCGTC GAAGATCGAC GTGAGCCAGA TCGAGCGCGA GCTGCGCCGG 
GCCATCCTGC GCTACGAGCC GCGCATCCTC GAACACGACC TGCGCGTGCA GGCGATCGAA 
TCCGACAGCC TGCTCGACAG CCACAACATC ATCGAGTTCG AGATCAGCGG CTGGCTGTGG 
GCGCAGCCGG TGCCGCTGGA GCTGCTGCTG CGCACGCGCT TCGACCTCGA GGCCGGCCAG 
GTGGCGGTGC ACGAGCGCAG TGCCGTCAGC GTGTCGGCCG CTGCAGGCGC TGCGCCGCGG 
GAGGCTGCCC AATGA 

 

Protein sequence

MALQPLRERL QPALLDRLSD DDPASAVEAD ERRFMSKAQL RAAVLRDLGW LFNAVQPLGG 
GAAETWPQAG ASVLNFGLPP VSGQLASKID VSQIERELRR AILRYEPRIL EHDLRVQAIE 
SDSLLDSHNI IEFEISGWLW AQPVPLELLL RTRFDLEAGQ VAVHERSAVS VSAAAGAAPR 
EAAQ