| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4085 |
|---|
| Symbol | |
|---|
| ID | 6161756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4580698 |
|---|
| End bp | 4581831 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641666863 |
|---|
| Product | type VI secretion protein |
|---|
| Protein accession | YP_001793102 |
|---|
| Protein GI | 171060753 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00000000191474 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCGC AATCACCCGA TCCCACCGAC CTGGCCGGCG CTGCCGCGCA GACGCCGGCC
GAGCGTGCGC GGGCCCACCA GCAGTTGCTC GGCGCGCTGG CGGTGCAGCC GTGGCGACAC
GATTTCTTCC AGCTGCTGCG CTGGGTCGAG GCCCTGCATC CGCAGGCGCC GCGGCTGGGT
CGGGCGGCGC GCCCGCGTGA CGAGCCGCTG CGCATCGGCC AGGATCCGGA GCTGTCGTTC
GCGCCCGCGG CGCTGCACAG CTATCGCGAA CAGACGGGCG CGCCGCCGCG CATCGGCCAG
CGCTTCTTCG GCCTGTTCGG CCCGATGGGC CCGTTGCCGC TGCACCTGAG CGAATACGTG
CGCGAGCGTG CCCGCAGCCT GGGCGACGCC ACGCCGCTGG CCTTTGCCGA CATCTTCCAG
CACCGCGCCA GCCTGCTGTT CTACCGGGCC TGGGCACAGG CTCAGCCGGT GAGCCACCTC
GACCGGCCGG GCGACGATGC CTTCGGCCGC TGGCTGGCGT CGCTGGCCGG GCTGGGCGAT
CCGTCGATGC GCGAGCGCGA CCACGTGCAC GACCACGCCA AGCGCCTGCA CGTGGGCACG
CTGGCGCGCG GCCCGCGCAA TGCCGAGGGG CTGGTGCGCA TCGTCGGCCA GTACTTCAAG
GTGCCGGTGC GCATCGAGCC GCACGTCGGC CACTGGCTCG ATCTCGAGCG CAGCGAGCGC
CTGGTGCTGT CGCGCGGCGG GCGGGCTGCG ACCGGGCGAC TGGGCCTGAG CGCGGCGGCG
GGCTCGCGGG TGTGGGATCG GCAGAGCCGT TTCCGGCTGC ACCTGGGGCC GCTCGGCCTG
GCGCAGTACG AGCGTTTCCT GCCCGGCCAG CCGGCCCTGC TGGCGCTGCG CGACTGGCTG
CGGCTCTACA CCGGCCTGGG CCTGGCGTGC GAGCTCAAGC TGGTGCTGGC GGGCCGCGAG
GTGCCCGAGG CGCGGCTGGG CGGGCACCGC GGCGGCGGCG CTGCCGCGCG GCTGGGCCGC
AGCAGCTGGC TCGGCGTGCG GCGCGTGCCC GCCGATCGAC CGCCGCCGCG CGACCGCGCC
GACCTCGCCT TCCTGGTCGA GCCTGTCCGT TCCTGCACCG ATGCATCGAG GTGA
|
|---|
| Protein sequence | MAPQSPDPTD LAGAAAQTPA ERARAHQQLL GALAVQPWRH DFFQLLRWVE ALHPQAPRLG
RAARPRDEPL RIGQDPELSF APAALHSYRE QTGAPPRIGQ RFFGLFGPMG PLPLHLSEYV
RERARSLGDA TPLAFADIFQ HRASLLFYRA WAQAQPVSHL DRPGDDAFGR WLASLAGLGD
PSMRERDHVH DHAKRLHVGT LARGPRNAEG LVRIVGQYFK VPVRIEPHVG HWLDLERSER
LVLSRGGRAA TGRLGLSAAA GSRVWDRQSR FRLHLGPLGL AQYERFLPGQ PALLALRDWL
RLYTGLGLAC ELKLVLAGRE VPEARLGGHR GGGAAARLGR SSWLGVRRVP ADRPPPRDRA
DLAFLVEPVR SCTDASR
|
|---|
| |