Gene Lcho_4084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4084 
Symbol 
ID6161755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4577943 
End bp4580693 
Gene Length2751 bp 
Protein Length916 aa 
Translation table11 
GC content69% 
IMG OID641666862 
Producttype VI secretion ATPase 
Protein accessionYP_001793101 
Protein GI171060752 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0542] ATPases with chaperone activity, ATP-binding subunit 
TIGRFAM ID[TIGR03345] type VI secretion ATPase, ClpV1 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000202411 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCGAGA TCTCCCGCAC GGCCCTGTTC GGCAAGCTCG ACCCGCTGGC CTACAAGGCG 
ATCGAAGGCG CCACGGTGTT CTGCAAGATG CGCGGCAATC CCTACGTCGA GCTGCAGCAC
TGGCTGGCGC AGATCCTCAA CACGCCCGAT TCCGACCTGC ACCGCATCAT TCGCCACTAC
GAGCTCGACA GCGCCGCGCT CGCCGCCGAC CTGACGCGCT CGCTCGACCG CCTGCCGCGC
GGCGCCTCGT CGATCTCGGA CTTCTCGACC TTCGTGCTCG ATGCGGTCGA GCGGGCCTGG
ATCTACGGCT CGCTGATGTT CGGCGAACGC CAGATCCGCA CCGGCCACCT GCTGATCGGG
CTGCTCAAGA CGCCGTCGCT GCGCAACGTG CTGCTGTCGA TCTCGAAGCA GTTCGAGCGC
GTCAAGCTCG ATGACCTGGC CGACCGATTC GCCAGCCTGC TGGCGGCGTC GCCCGAGCAG
TCGCAAGGCG CCAGCGACAG CGGTGCCGCA CCCGGCGAGG CCAGCGACGC GATCCCGCCC
GCGGCGATGG GCAAGCAGGA GGCGCTCAAG CGCTTCACCA CCGACCTCAC CGAGCAGGCG
CGCGCCGGCA AGATGGACCC GATCGTCGGC CGCGACGACG AGATCCGCCA GGTGGTCGAC
ATCCTGATGC GCAGGCGCCA GAACAACCCG ATCCTGGTCG GCGAGGCCGG TGTCGGCAAG
ACCGCGGTGG TGGAAGGTTT CGCCCAGCGC ATCGCCCGCG GCGACGTGCC GCCGGCGCTG
AAGGAGGTGC AGCTGCTCGC GCTCGACGTC GGCCTGCTGC AGGCGGGGGC GAGCATGAAG
GGCGAGTTCG AGCAGCGCCT GCGTTCGGTG ATCGAGGAGG TGCAGGCGAG CCCGAAGCCG
ATCATCCTGT TCGTCGACGA GACCCACACG CTGGTCGGCG CCGGTGGCGC GGCCGGCACG
GGGGACGCGG CCAACCTGCT CAAGCCCGCG CTGGCCCGCG GCACGCTGCG CACGGTGGGC
GCCACCACCT TTGCCGAGTA CAAGAAATAC ATCGAGAAGG ACCCGGCGCT GACGCGGCGT
TTCCAGAGCG TGCAGGTCGA CGAGCCGGAT GAAAAACGCG CCATCCTGAT GATGCGCGGC
GTCGCCAGCA CGATGGAAAA GCACCACCAG GTGCAGATCC TCGACGAGGC GCTGGAGGCC
GCCGTCAAGT TGAGCCACCG CTACATCCCG GCGCGCCAGC TGCCCGACAA GAGCGTCAGC
CTGCTCGACA CCGCCTGCGC CCGCGTGGCG GTGAGCCTGC ACGCGACGCC GGCCGAGGTC
GACGACACGC GCAAGCGCAT CGAGGCGCTC GAGACCGAGC TCGGCATCAT CGGCCGCGAG
CGCGCCATCG GCATCGACGT GCTGGAACGC GAGGCCGATG CATCGCGCCT GCTGGCCGAT
GAACGCGAGC GCCTGGCCCT GCTCGACCAG CGCTGGGCCG AAGAGAAGAC GCTGGTCGAC
GAGCTGCTCG CCCTGCGCGC GAAGCTGCGT GGCGGCGTGC GGCCGGTCGA AGGCACCGGC
AGCGAACTCG AAGCGGCGGT GGCGCCGGTG GCCGAGGGGG TCGCCGAGCC GGGTCTGAGC
GAGGGCGAGC GCGCCGACGC GCTGGCCCGC CTGCGCGAGG TGCAGGCGCA GCTCGCCACG
CTGCAAGGCG AGAGCCCGCT GATCCTGCCC ACGGTCGACT ACCAGGCGGT GGCCAGCGTG
GTCGGCGACT GGACCGGCAT CCCGGTCGGC CGCATGGCGC GCAACGAGAT CGACACCGTG
CTCAAGCTGC CCACGCTGCT GGCCCAGCGC GTGATCGGCC AGGACCACGC GATGGAGATG
ATCGCCAAGC GCATCCAGAC CTCGCGCGCC GGCCTCGACA ACCCGGGCAA GCCGATCGGC
GTCTTCATGC TCGCCGGCAC TTCGGGCGTC GGCAAGACCG AAACCGCGCT GGCGCTGGCC
GAGGCGCTCT ACGGCGGCGA GCAGAACCTC ATCGTCATCA ACATGAGCGA GTACCAGGAG
GCTCACACCG TGAGCTCGCT CAAAGGCGCG CCACCCGGCT ACGTCGGCTA TGGCGAAGGG
GGCGTGCTGA CCGAGGCGGT GCGCCGCAAG CCCTACAGCG TGGTGCTGCT CGACGAGGTC
GAGAAGGCCC ACCCGGATGT GCACGAGCTG TTCTTCCAGG TCTTCGACAA GGGCTTCATG
GAAGACGGCG AAGGCCGCGT GATCGACTTC AAGAACACCC TGATCCTGCT GACCACCAAC
GCCGGCACCG AGCTGATCTC GGCGCTGTGC CGCGACCCCG CGCGCATGCC CGACCCGGAG
GGCATGGCGA AGGCGCTGCG CCAGCCGCTG CTGGAGATCT TTCCGCCCGC GCTGCTCGGC
CGGCTGGTGG CGATCCCGTA TTACCCGCTC AGCGACGAGA TGCTCGGGCG CATCGTCAAG
CTGCAGCTGG AGCGCATCCG CAAGCGGGTG GAGACGCGCT ACAAGATCCC GTTCGAGTAT
GGCGACGACG TGGTCGAGCT GGTGGTCAGC CGCTGCACCG AGAGCGAGTC GGGCGGGCGG
ATGATCGACG CGATCCTGAC CAACACGATG CTGCCGGACA TCAGCCGCGA GTTCCTGAAT
CGCATGCTCG ATGGCACGCC GATCGAGCGG GTGGAGGTGC AGGTCAGCGA AGGCAATTTC
GCCTACGGCT TCGGGCCCGA CACGGCCGCG CCCGCACGCG ATGAACCCTG A
 
Protein sequence
MTEISRTALF GKLDPLAYKA IEGATVFCKM RGNPYVELQH WLAQILNTPD SDLHRIIRHY 
ELDSAALAAD LTRSLDRLPR GASSISDFST FVLDAVERAW IYGSLMFGER QIRTGHLLIG
LLKTPSLRNV LLSISKQFER VKLDDLADRF ASLLAASPEQ SQGASDSGAA PGEASDAIPP
AAMGKQEALK RFTTDLTEQA RAGKMDPIVG RDDEIRQVVD ILMRRRQNNP ILVGEAGVGK
TAVVEGFAQR IARGDVPPAL KEVQLLALDV GLLQAGASMK GEFEQRLRSV IEEVQASPKP
IILFVDETHT LVGAGGAAGT GDAANLLKPA LARGTLRTVG ATTFAEYKKY IEKDPALTRR
FQSVQVDEPD EKRAILMMRG VASTMEKHHQ VQILDEALEA AVKLSHRYIP ARQLPDKSVS
LLDTACARVA VSLHATPAEV DDTRKRIEAL ETELGIIGRE RAIGIDVLER EADASRLLAD
ERERLALLDQ RWAEEKTLVD ELLALRAKLR GGVRPVEGTG SELEAAVAPV AEGVAEPGLS
EGERADALAR LREVQAQLAT LQGESPLILP TVDYQAVASV VGDWTGIPVG RMARNEIDTV
LKLPTLLAQR VIGQDHAMEM IAKRIQTSRA GLDNPGKPIG VFMLAGTSGV GKTETALALA
EALYGGEQNL IVINMSEYQE AHTVSSLKGA PPGYVGYGEG GVLTEAVRRK PYSVVLLDEV
EKAHPDVHEL FFQVFDKGFM EDGEGRVIDF KNTLILLTTN AGTELISALC RDPARMPDPE
GMAKALRQPL LEIFPPALLG RLVAIPYYPL SDEMLGRIVK LQLERIRKRV ETRYKIPFEY
GDDVVELVVS RCTESESGGR MIDAILTNTM LPDISREFLN RMLDGTPIER VEVQVSEGNF
AYGFGPDTAA PARDEP