| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4080 |
|---|
| Symbol | |
|---|
| ID | 6161751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4571976 |
|---|
| End bp | 4574291 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666858 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_001793097 |
|---|
| Protein GI | 171060748 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000000279673 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACC CCATCACCGT CAGCAGCCCC TTGCCGGCGC AGGACTTGTT CTTCGAGTCC
ATGCGCTACC GCGGCGGCCT GAGCACGCTC GGTGAGCTGG AGCTGGATCT GCTGAGCCCC
AAGCCCGGGC TCGATCCGCT GGCGCTGCTG GGCCAGCCGC TGAGTGTCAA CGTCACGTTG
CATGACGGCA GCCAGCGCCA CTTCAGCGGC CTGGTCAGCC GCTTCGGCAT GGGCCGCGAC
CGGCCCGCCG GCGCGGCGCC GACGGGTGCC GCGGCCGGCC AGGGCCGCTA CTACGCCTAC
CGCGCGCGGG TGGTGCCGTG GCTGTGGTTC CTGACCCGCA CCGCCGACTG CCGGATCTTC
CAGGAGCAGA CGGTGCCCGA CATCGTCAAG CAGGTGTTCG CCGACCACGA CATCGCGAGC
TTCGAGTTCA AGCTGTTCCG CAGCTATCGC AAGCTCGGCT ACTGCGTGCA GTACCGCGAG
AGCGATTTCC ACTTCGTCGC CCGCCTGCTC GAACACGAAG GCATCTACTG GTACGTGGAA
CACGGCGACG GCGCGCACAA GCTGGTGCTG GTCGACGCCA TGGGCGCGCA CGATGCCGCG
CCGGGCTGCC CCTCGCTGCG CTACACCGAG GATCTGGCGC AGGCGCCGCC GGACCAGGAG
TTCGTCACCC GCTGGCGTTT TGCCGAGGGC GTCAAGAGCG GCAAGGTGGC GCTCACCAGC
TACGACTTCG AGCGCCCGTC CACGCCGCTG GCGGTCGACG CGGTGCGCGA GCGCGACTAC
CCGCACGCCG ACTACGAGGT CTTCGATTTC CAGGGCGACT ACATCCAGGC CGCCGACGGC
AGCCACTACG CCGACAACGC CGCCGACGCC TTCCAGACCC GCTTCGTGCG CCACCACGCC
AGCGCCAACG CGCTGGGTGT GGAGGTGGGC CGGCGGCTGA AGATCAGCAA GCACCCGCGC
GACTCGATCA ACGCCGAATA CCTGATCACC GACCTCGACG TGCACGCGCA GGTGGCCGAA
CACGGCGCGG CGCAGGCGGT GAGCCGCTTC GATTGCGAGT TCGACGCGAT CCCGGCCGAG
CAGCAGTTCC GCCCCATGCG GCGCGCCCGC AAGCCCAGCG TGCAGGGGCC GCAGACCGCG
GTGGTGGTGG GGCCGGCCGG CGAGGAGATC TTCACCGACA AGTACGGCCG CGTGAAGGTG
CAGTTCCATT GGGACCGTTA CGGCCAGCGC GACGAGAAGA GCAGTTGCTG GGTGCGCGTC
AGCCAGCCCT GGGCCGGCAA GAACTTCGGC TTCATGCAGA TCCCGCGCAT CGGCCAGGAG
GTGGTGGTCG ACTTTCTGGA GGGCGACCCG GATCAGCCGC TGATCACCGG CCGCATCTAC
AACGCCGAGC AGATGCCGCC GTGGGATCTG CCGGCCAACG CCACGCAGAG CGGCGTGCTG
AGCCGCTCGT CGCAAGGCGG TGCCTACGGC AATGCCAATG CACTGCGCTT CGAGGACAAG
AAGGGGGCCG AGCAGCTCTG GCTGCACGCC GAGAAGAACC AGGACATCGA GGTCGAGAAC
GACGAGACGC ATTGGGTCGG GCATGACCGC AGCAAGACCG TCGACCACGA CGAGCAGGTG
CACGTCAAGC ATGACCGCAC CGAGGTGGTC GACCACGACG AACAGATCAC CGTTCACCAC
GACCGCAGGG AACGTGTCGA CAACGACGAG TCGATCGGCA TCGGCCGTGA CCGCAAGATG
CTGATCGAGC GCGACAAGAC CGAGACGGTC GCGCGCGACA AGGGCATCCA CATCGGCGGC
AGCCACTCCG AGAGCGTGGG CGGCTCGATG AGCGTCTCGG TGGCGGGCAC GCTGACCGAG
TCGGTGGGCG TGAACTACGC CGAGACCGTG GGTGGCGCCA TGGAAATCAC CGTGGGCGCG
GTGATGGCCA TCACCGTGGG TGGGGCCCTC GCCGAGACGG TGGGGGGATC CAAGTCGGCG
TCGGTGGGCT CGGGCAAGTC AGAAACCATC GGCGGCAGCC TGTCGGTGAC GGTCGCCAAG
GATGTCACCG AGTCGATCTC GGGCAACCGG ACCGTGACCG TCCACAAGAA CCTTACGCAA
GCGGTCAAGG GCGATCAGGT GGTCGAGGTC ACCAAGAACG CGTCGGTCAA GGCCAAGAAG
ATCCAGCTCG TGGCCGACGA CGAGATCAGC TTGAAGACCG GCAGCGCCGA GATCACGATG
AAGAAGAACG GCGACATCAC CATCAAGGGC AACAAGATCA CCGTCAAGGG CGACAGCGAC
GTCATCCTCA AGGGCAGCAA GATCGCGGAG AACTGA
|
|---|
| Protein sequence | MANPITVSSP LPAQDLFFES MRYRGGLSTL GELELDLLSP KPGLDPLALL GQPLSVNVTL
HDGSQRHFSG LVSRFGMGRD RPAGAAPTGA AAGQGRYYAY RARVVPWLWF LTRTADCRIF
QEQTVPDIVK QVFADHDIAS FEFKLFRSYR KLGYCVQYRE SDFHFVARLL EHEGIYWYVE
HGDGAHKLVL VDAMGAHDAA PGCPSLRYTE DLAQAPPDQE FVTRWRFAEG VKSGKVALTS
YDFERPSTPL AVDAVRERDY PHADYEVFDF QGDYIQAADG SHYADNAADA FQTRFVRHHA
SANALGVEVG RRLKISKHPR DSINAEYLIT DLDVHAQVAE HGAAQAVSRF DCEFDAIPAE
QQFRPMRRAR KPSVQGPQTA VVVGPAGEEI FTDKYGRVKV QFHWDRYGQR DEKSSCWVRV
SQPWAGKNFG FMQIPRIGQE VVVDFLEGDP DQPLITGRIY NAEQMPPWDL PANATQSGVL
SRSSQGGAYG NANALRFEDK KGAEQLWLHA EKNQDIEVEN DETHWVGHDR SKTVDHDEQV
HVKHDRTEVV DHDEQITVHH DRRERVDNDE SIGIGRDRKM LIERDKTETV ARDKGIHIGG
SHSESVGGSM SVSVAGTLTE SVGVNYAETV GGAMEITVGA VMAITVGGAL AETVGGSKSA
SVGSGKSETI GGSLSVTVAK DVTESISGNR TVTVHKNLTQ AVKGDQVVEV TKNASVKAKK
IQLVADDEIS LKTGSAEITM KKNGDITIKG NKITVKGDSD VILKGSKIAE N
|
|---|
| |