Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4069 |
Symbol | |
ID | 6162155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4558033 |
End bp | 4562034 |
Gene Length | 4002 bp |
Protein Length | 1333 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666847 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_001793086 |
Protein GI | 171060737 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0000202305 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATCTCC CGCAAGGATC TGAGAACCCG GCGACGCTGC GCGCGGCTTC GGCTGGCCCG TCGGCGCGGA CGCTGCTTCA TTGCGCCCTG GCGGTGCTGC TGTGCCTGGC TGCGCTGTGG CTGCGCCAGG GTCTGGCCGT GACCTTCGGC GATCGGCCGC TGCTGATCCT GTTCATGTTC CCGATCCTCC TCAGCGCGCT GCTGGGCGGG TTCCTGCCGG GGCTGGTGGC GACGGCGTCG GCCGCGGCCT GCACCTACTT CTTCTTCATC CCGCCGGCCC AAAGCCTGGC CAGCGGTGCC GCGTCGGACG TGCTGCAGTG GGGCATGCTG GTGGCCAGCG GCCTGCTGAC CAGCGCACTG AGCCACGCCC TGCAGCGCAC CCGCCGGCGC GAGGCCGAGC AGCTGCGCCA GCTCGCCGCC ACCCGGCAGA GCCTGACCGA ATCGGAGCGG CGTTTCCAGG CCGCCTTCGA GCAGGCGGCA GTCGGCATCG CGCTGGTCGG GCCGGACGGC CGCTGGCTGC GGGTCAACCG CAAGCTGTGC GAGATCGTCG GCTACGGCGC CGACGAACTG CTGGCGCGCA CCTTCCAGGA CATCACGCAT CCGGACGACC TGCGAACCGA TCTCGACCAG GTGGGGCGGC TGCTGCGCGG CGAGATCTCG ACCTACACGC TCGAGAAGCG CTATGTCCGC AAGGATGGCA GCCTGCTCTG GATCCAGCTC ACGGTGTCGC TGGTGCGGCG CATCGACGGT GAGCCCGACC ATTTCATCTC GGTGGTCGAG AACATCCAGG CGCGCAAGGC CGCCGAAGAA GAGCGCCGGC TGTTCAGCGA GGCGCTGCGG CAGGCCTCGC AGCCGCTGCT GATGGCCGAT GCGCAGTTCC ACATCAGCTA CGTCAACCCG GCGTTTTCGC AGCTGCTCGG CTACGCGCCG AGCGACCTCG CGGGCCGCCA CGTGAGCTGC CTGACGCCGC CCGATCCCGC CGCCCTGCAG GCACAGGCCG AAGGCATCGT CGAACTCAAG ACGCTCGGCC GGTTTTCGGG CCCGCTCGAC CGCCTGGCCT GCGACGGCAC GGTGATCCCG CTGGCGGCCA ACATCGGGCC GGTGCGCGAC GCCCGCGGCG AGGTGGTCGC CTGGGTCGCC AGCTACCTCG ACCTGCGGCC GCTGCGCGAG AAGGACAAGC TGCTGCGCAT GCTCGCGCTG GCGATCGAGC AGAGCCCGGC GAACGTGGTC GTCACCGATC TGGAATCGAA GATCGAGTAC GTCAACGACG CCCTGCTGCA CGACAGCGGC TACAGCCGCG CCGAGCTGCT CGGCACCAGT GCCCGTTCGC TGTTGTCGCC GCAGACGACG CCCGAGCTGC TGCAGGGCAT CGGCGAGGCC CTGGCACGCG ACCGGCGCTG GCGCGGCCAG CTGATCAACC GGCGCAAGGA AGGCAGCGAA TACACCACCG CGGCGGTGGT CTCGGCGTTG CAGGACGAGC GCGGCCGCGT CACCCACTTC GTGGCGGTGC AGCAGGACAT CACCGATCGC CTGCACGACG CCGCCGAGCT CGAGCGCTAC CGCTGCCACC TCGAGGTGCT GGTGGCCGAG CGCACCCGCC AGCTCGAGGA GGTCAATCGC TCGCTGAGCG AGCAGCAGCA GTTCGTGCGC AACGTCGCCG ACGCGGTGCC GGCGCTGGTG GGCTATTTCG ACCCGCAGCT GTACTGCCGC TTCGCCAACG CGGCCTACCT CGAGTGGTGG GGCCTGCGGC CCGACGAGGT GGTCGGACTG CATGCGCGCG AGCTGATCGG CGACGAGATG TTCCGGCGCA ACGAGCCGTC CATGCGGGCG GCGCTGCGGG GCGAGTCGCC GCGCCTCCAG CGCGCCCTGC CGCACACCGA CGGCAGCCTG CGCGAGACGC TGATCGCCTA CGTGCCCGAC CGGCAGGACG GCCAGGTGCG CGGCTTCATC GTGGTGGTGT CCGACATCAC CGAGATCAAG GTGGCCGAGC AGCAGATGGC CGCGCTCAAC GCCCAGCTGG CGGCGCGCGC GATCGAGGCC GAGGGCGCCA CGCGCGCCAA GAGCGCCTTC CTGGCCAACA TGAGCCACGA GATCCGCACG CCGATGAACG CGATCATCGG CCTCACCCAC CTGATGGCGC GCGACACCCG CGACTCGCTG CAGCGCGAGC GGCTCGGCAA GATCGACAGC GCCGCCAAGC ACCTGCTGCA GATCATCAAC GACGTGCTCG ACCTGTCCAA GATCGACGCC GGCAAGCTGG TGCTCGAGGA CACCGAGTTC AACCTCGACG AGGTGCTGTC GCGGGCCTTC GAGCTGGTGG GCGAATCGGC CAACGAAAAA GGCCTCGAGC TGGTGCTCGA CACCGACCGC CTGCCCAGCC ACCTGCGCGG CGACCCGACG CGGCTGTCGC AGGCGCTGAT CAACCTGCTC GCCAATGCCG TCAAGTTCAC CCACGCCGGC TGGGTGCGCC TGCGTGGCGA GCTGCTGGCC GAGGACCGCC AGCGCGTGCA GGTGCGCTTC GAGGTGCAGG ACACCGGCGA GGGCATCGAG CCCGAGCGCT TCGGGTCGCT GTTCAACGCC TTCGAGCAGG CCGACGCCTC GACCACCCGC CGCCACGGCG GCACCGGCCT GGGCCTGGCG CTGACGCAGC ACCTGGTCAC GCTGATGGGC GGCGAGATGG GCGTGCGCAG CGAGCCGGGC GTCGGCAGCA CCTTCTGGTT CACCGCCTGG CTGGGCCGCG CCGCCGAGGC CGGCGAGCGG GCTTCGGCGG TCCCGCTGCA GGGCCTGCGG GCGCTGCTGG TCGACGACCT GCCCGAGGCG CTGAGCGCCA TCGGCGACCG CCTGCAGCAT TTCGGCCTGC GGATCGATCC GCTCGACAGC GGCACGGCGG CGCTGCAGCG CGTGCGCAGC GAGATCAGCG CCGGCCGGCC CTACGACGTG TTCCTGATCG ACTGGCGCAT GGAGCCGCTC GACGGCATCG AGACCATGCG CCAGCTGCGC GAGCTGCTGG GCGCGGGCAT GCCGCCGGCC ATCCTCGTCA CCGCCTTCAA CAACACCGCC ATGTGGCAGC AGGCGCGCGG CGTGCAGGCC GACGCGGTGC TGGTCAAGCC GATCACGGCC TCGGCGCTGC ACGACACGCT GATGCGCGTG CTGCGCAGCC GCAGCGCCAC ACGCAGCGCC GAGCCCGCGC CGCCCGGCCA GGGCGAGGCC CAGCTGCTGC GCCGCCACGC CGGCCAGCGC GTGCTGCTGG CCGAGGACAA CCCGATCAAC CAGGAGGTCG CCAACGAGCT GCTGCAGGGT GTCGGGCTGG TGGTGGAGAC GGCGGTCGAC GGCGCCAGTG CGGTCGAGCT GGCGTGCTCG CGTGCCTACG ACCTGATCCT GATGGACATG CAGATGCCGG AGATGGACGG CATCGCCGCC ACCCGCGCGA TCCGCGCCCG GCTCGGCCGC GCCATCCCGA TCGTCGCGAT GACCGCCAAC GCCTTCAGCG AAGACCGCCA GGCCTGCCTC GACGCCGGCA TGAACGACCA CGTCGCCAAG CCGGTCGATC CCGGCACGCT CTACGCCACG CTGCTGCGCT GGCTGCCGCT GGTCAGGACA CCCGCCGAAG CCGTGGCGTC ACCGCCGCCG CCGCGCCTGC CGCTGCAGCA GCGCCTGGAC ACGGTCGAGG GCTTCGATCT GGCGCTGGGC CTGAACAACG TCGGCCGCCA GTTCTCGACC CTGGTGCGCG TGCTCGGGCT GTTCGTCAAG CGCTACGGCG AGGGCGAGCC GGCCTTGCTC GATGCCTCCG AGCCCGGCGC CGCGGCCCGC TGGGCGGCGG CCTGCCACTC GCTGCGCGGC GCCAGCGGCA CGCTCGGTGC CCGCCGGCTG GTGCAGCACC TGGTGCAGTT CGAGCAGGAG CTGCATTCCA CCGGCGACGT CGCCGCACTG GCGCCGCGCG CCCGCCAGCT CCACGAGGAG CTGCTGGCGC TGGTGCAGGC GCTGCAGGCG GCGCTGGACT GA
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Protein sequence | MDLPQGSENP ATLRAASAGP SARTLLHCAL AVLLCLAALW LRQGLAVTFG DRPLLILFMF PILLSALLGG FLPGLVATAS AAACTYFFFI PPAQSLASGA ASDVLQWGML VASGLLTSAL SHALQRTRRR EAEQLRQLAA TRQSLTESER RFQAAFEQAA VGIALVGPDG RWLRVNRKLC EIVGYGADEL LARTFQDITH PDDLRTDLDQ VGRLLRGEIS TYTLEKRYVR KDGSLLWIQL TVSLVRRIDG EPDHFISVVE NIQARKAAEE ERRLFSEALR QASQPLLMAD AQFHISYVNP AFSQLLGYAP SDLAGRHVSC LTPPDPAALQ AQAEGIVELK TLGRFSGPLD RLACDGTVIP LAANIGPVRD ARGEVVAWVA SYLDLRPLRE KDKLLRMLAL AIEQSPANVV VTDLESKIEY VNDALLHDSG YSRAELLGTS ARSLLSPQTT PELLQGIGEA LARDRRWRGQ LINRRKEGSE YTTAAVVSAL QDERGRVTHF VAVQQDITDR LHDAAELERY RCHLEVLVAE RTRQLEEVNR SLSEQQQFVR NVADAVPALV GYFDPQLYCR FANAAYLEWW GLRPDEVVGL HARELIGDEM FRRNEPSMRA ALRGESPRLQ RALPHTDGSL RETLIAYVPD RQDGQVRGFI VVVSDITEIK VAEQQMAALN AQLAARAIEA EGATRAKSAF LANMSHEIRT PMNAIIGLTH LMARDTRDSL QRERLGKIDS AAKHLLQIIN DVLDLSKIDA GKLVLEDTEF NLDEVLSRAF ELVGESANEK GLELVLDTDR LPSHLRGDPT RLSQALINLL ANAVKFTHAG WVRLRGELLA EDRQRVQVRF EVQDTGEGIE PERFGSLFNA FEQADASTTR RHGGTGLGLA LTQHLVTLMG GEMGVRSEPG VGSTFWFTAW LGRAAEAGER ASAVPLQGLR ALLVDDLPEA LSAIGDRLQH FGLRIDPLDS GTAALQRVRS EISAGRPYDV FLIDWRMEPL DGIETMRQLR ELLGAGMPPA ILVTAFNNTA MWQQARGVQA DAVLVKPITA SALHDTLMRV LRSRSATRSA EPAPPGQGEA QLLRRHAGQR VLLAEDNPIN QEVANELLQG VGLVVETAVD GASAVELACS RAYDLILMDM QMPEMDGIAA TRAIRARLGR AIPIVAMTAN AFSEDRQACL DAGMNDHVAK PVDPGTLYAT LLRWLPLVRT PAEAVASPPP PRLPLQQRLD TVEGFDLALG LNNVGRQFST LVRVLGLFVK RYGEGEPALL DASEPGAAAR WAAACHSLRG ASGTLGARRL VQHLVQFEQE LHSTGDVAAL APRARQLHEE LLALVQALQA ALD
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