| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4064 |
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| Symbol | |
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| ID | 6162599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4552514 |
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| End bp | 4554256 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641666842 |
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| Product | FHA domain-containing protein |
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| Protein accession | YP_001793081 |
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| Protein GI | 171060732 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3456] Uncharacterized conserved protein, contains FHA domain |
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| TIGRFAM ID | [TIGR03354] type VI secretion system FHA domain protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000372597 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCTCA CCCTCAGCGC CCTGTCCCTC AACGACCAGC CCCTGAGCCA GCCGGTGGTG
GCGCATTTCG ACGACCAGGG CGGCACCATC GGGCGCGGCG ACCAGAACAC GCTGGCGCTG
CCCGACCCCG AGCGCCACAT CTCGCGCCAG CACGCCCGCA TCACCGCCGA GGCCAAGGGC
TACCGCATCA CCAACCTGAG CAGCGCCAAC GCCGTGACGG TGGCCGGGCG CACGCTGGGC
CAGGGCGAAT CGGCGCCGAT CCGCCACCGC GACCAGGTGC GCATCGGCGG CTTCCTGCTC
GAGGCGCGCG ACGACAGCGC CGACGACCTG CTGGCCCGCA CCATCACCGG CGGGCGCGCT
GCCACCGCCG CCACGGCCGA CAAGTCCGGC GGCGTCCGCC CGGGTGGCGT GGCGGGTGGC
GGGCCGCCGC CGATCGCCGC GCCGAGCCCG GAGGCCGATC CGTTTGCCGA CTTCTTCGGC
CCGGCGGTGG TGCGGCCCGC CGCGCCGCGC CAGGGCGCGC CCGGCCCGGC GGTGGCGCCG
GCGGCCGATC CGTTCGCCGG CTTCACCGGC TTCGGTGCGC CCGCTCCTGC GCCCGTCGCC
AGCCACGGGC GGCCCGGGGC GGCATCGGCG GGCCCGCTGG CGGGTTTTTC CGGGCTGGGC
GAACCCGGCG GCTCGATCGA CGACCTGCTC GGCCCGGGCT TGGGCGCAGG CGCGGGCACC
GGCGCGGATC TCGATGCCTT CCTGCGCCAG CCGGTGGGCG CGCCCGACGC GGCTGCCGCA
CCCGCCGCCG CGGCGCCGGC CCGGCCGTCT GCGGGGGCCA GCCAGCCCGA CCACGTGCCG
GCCCTGCAGG CCGCGTTCAA GGCACCGGTC TGGCCCGAAC CCCCGCCCGA ACCCGTGACC
GCGCCGACCC CGCTGCTGGC GCCGACCCCG GCATCGGCTC GTTCACCGGC CCCACCTCCA
ACCTTTGCGC CGACCCTTGC GCCCGCCACG CCACGCCCGC CTGCGCCTGC CGTGGCCGCC
GGGACCACAC CCTCGCCGCG CGGCCCGTCG CCCGCGTGGG CCGATGCCGA CGACCCCAGC
GCCGCCCTCT GGCGCGCCTT CTGCGAGGGC GCTGACCTGC ACCTGCAGTT GCCGCAAGGC
CTGTCGCCCG AGCTGATGCG GGTGATCGGC CAGCTGCTGC GCAGCGCGGT CGACGGCACG
CAGCAGATGA TGGCGATCCG CGCCGCCACC AAGCACGAGC TGCGCGCCGA CGTCACCATG
ATCCAGGCGC GCCAGAACAA CCCGCTCAAG TTCTCGCCCG ACGCCCAGGC CGCGCTCGAA
CAGCTGCTGC AGCCGCCGAT GCGCGGCTTC CTGCCCGGCC CGGCGGCCAT GACCGACGCC
ATGCACGACC TGGTCGGCCA CACCATCGGC ACCATGGCCG GCATGCGCGC CGCGCTCGAA
GGCGTGCTCA ACCGCTTTGC GCCGACGGTG CTCGAAGGCA AGCTCACCAC CAGCTCGGTG
CTCGACACCC TGCTGCCGAT GAACCGCCGC TCGCGCCTGT GGGAGCTGTA CCTGCAGCAT
TTCGAGGGCA TCCGCCAGGA GGCGCAGGAA GATTTCCACA CCCTGTTCGG CCGCGCCTTC
CTGGCCGCCT ACGAGCAGCA GCTCGACCGC CTGCACGCCC AGCACGCCGA GCACGACCGC
CAGCGCCCGG CGGCGCCGTC AGCGTCGTCG CCGTCGTCAT CCCCCCCGTC GTCGCCGCCG
TGA
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| Protein sequence | MTLTLSALSL NDQPLSQPVV AHFDDQGGTI GRGDQNTLAL PDPERHISRQ HARITAEAKG
YRITNLSSAN AVTVAGRTLG QGESAPIRHR DQVRIGGFLL EARDDSADDL LARTITGGRA
ATAATADKSG GVRPGGVAGG GPPPIAAPSP EADPFADFFG PAVVRPAAPR QGAPGPAVAP
AADPFAGFTG FGAPAPAPVA SHGRPGAASA GPLAGFSGLG EPGGSIDDLL GPGLGAGAGT
GADLDAFLRQ PVGAPDAAAA PAAAAPARPS AGASQPDHVP ALQAAFKAPV WPEPPPEPVT
APTPLLAPTP ASARSPAPPP TFAPTLAPAT PRPPAPAVAA GTTPSPRGPS PAWADADDPS
AALWRAFCEG ADLHLQLPQG LSPELMRVIG QLLRSAVDGT QQMMAIRAAT KHELRADVTM
IQARQNNPLK FSPDAQAALE QLLQPPMRGF LPGPAAMTDA MHDLVGHTIG TMAGMRAALE
GVLNRFAPTV LEGKLTTSSV LDTLLPMNRR SRLWELYLQH FEGIRQEAQE DFHTLFGRAF
LAAYEQQLDR LHAQHAEHDR QRPAAPSASS PSSSPPSSPP
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