Gene Lcho_4060 details

Gene Information

• Locus tag: Lcho_4060
• ID: 6162595
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4550007
• End bp: 4550717
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666838
• Product: peptidase M15A
• Protein accession: YP_001793077
• Protein GI: 171060728
• COG category: [S] Function unknown
• COG ID: [COG3108] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.000018588
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAACCTGT CACGCTTTTT CACGCTGGCC GAACTGACCC ACTCCAACAC CGCCAAGGCC 
GAGGGCATCG ACAACCAGCC GACCACCACC GAGATCGAGG CGCTGCGCGC CTTGTGCACC 
GCCGTGCTCG ATCCGCTGCG CGAGGCGATC GGCAAGCCGA TCAAGGTGAC CTCCGGCTAC 
CGCGGCCCGG TGCTGAACCG GCGCGTCAAG GGCGCGGCCA AGAGCCAGCA CCTGCGCGGC 
GAAGCGGCCG ACCTGCAGTC GCCCGGCACG GCGGTGCTGG CGCTGTTCAA GCGGGTGATC 
CGGCTCGGGC TGCCGTTCGA CCAGCTCATC TACGAGGTGA ACGGCGCGTC GAAATGGGTG 
CACGTGTCGC ACAGCCGCGG CGGCAACGCG GGCGAGATCC TGCTCGGCAA GTTCGACGCT 
GCCGGCAAGG TGACGTATCC GCGGCTGACC GCCGAGCAGG CCCTGGCACT CACCGAGCCC 
CGCTCGCGCG CCCGTGCGGT CGAGCCCGAA TTCGTGGAAA TGGCCGACGA ACCGCCGAGG 
GCGGTGCGCA AGGCGCGCAG CGCAAAGACC GTGGCCCCGG CGCCGGAAAC CGCTCCGGCA 
CCCGCCGCGA AGAAGGCGCC CACGAAAAAG GTGGCCGCGC AACAAGCCCC CGCAAAGAAG 
GCTCCGGCCA AGAAGGTCGC CGCGCGCAAG GCCGCGGCGC CGAAGCCCTG A 

 

Protein sequence

MNLSRFFTLA ELTHSNTAKA EGIDNQPTTT EIEALRALCT AVLDPLREAI GKPIKVTSGY 
RGPVLNRRVK GAAKSQHLRG EAADLQSPGT AVLALFKRVI RLGLPFDQLI YEVNGASKWV 
HVSHSRGGNA GEILLGKFDA AGKVTYPRLT AEQALALTEP RSRARAVEPE FVEMADEPPR 
AVRKARSAKT VAPAPETAPA PAAKKAPTKK VAAQQAPAKK APAKKVAARK AAAPKP