| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4056 |
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| Symbol | |
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| ID | 6162889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4542212 |
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| End bp | 4543594 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 641666834 |
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| Product | hypothetical protein |
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| Protein accession | YP_001793073 |
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| Protein GI | 171060724 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000056515 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGCCC AGCCCCCCCG CCCCGGTGCC GGTCCGAACG ATCCGCACGA TCCGTTCGCG
GCGCTCGACA GCGGCGCCAC CGTCATCCGC CCCAACCCCG GCGCCCGCGC CGCGCCGGCG
CGCATGCCGG CCGCCCAGGA GCCGCCGGCC GCCGACACGC CGCTGCCGGC GCAGGGCCTG
AATCCGCTGG TCAGCCTGGC CAACCGCCTG CTGCTGGCGG TGCCGCAGCT GCGCGCGACC
CGCCACGTCG CCGACCCCGC CGCGCTCAAG CACAGCCTGG CGCAGGCGGT GCGCGACTTC
AGCACCGCCG CCGCCGCCGC CGGCATCACG CCGCAGCAGG TGATGGCCGC GCGCTACGTG
CTGTGCACCG TGCTCGACGA GGCCGCCAGC GACACGCCCT GGGGCGGCGC CGGCGTGTGG
GCCCAGCACA GCCTGCTGGT GACCTTCCAC AACGAGGCCT GGGGCGGCGA GAAGGTCTTC
CAGCTGATGG CCCGGCTGGC CGGCCAGCCG GCCGAACACC GCGACCTGCT GGAGCTGATC
TACGCCGCGC TGGCGCTCGG TTTCGAGGGG CGTTTCCGCG CCATCGAGAA CGGCCGCGCC
CAGCTCGACG CGGTGCGCGA CAAGCTCGCG CGCATCGTGC TGCAGGCGCG TGGCGACCAC
GCCCCGGCGC TGGCGCAGCA CTGGCAGGTC GAGGCGGTGG CGCAGCGCGC GCTGCCGGGC
TGGCTGCCGC TGCTGGTGAC GGCGCTGGTG CTGGGCCTGC TGCTGGTGGC CGCCTACATC
GGCCTGAGCT TCTGGCTCGG CGCGCGCTCC GACCCGGTGT TCGGCCAGAT CCAGGGCCTG
CGCCTGAACC CGCCGGTGGC CGCGGTGGCG CAGCCGGCGC CGCAGCCGCG GCTGGCGACC
TTCCTGCGGC CCGAGATCGC CGAGGGCGCG GTGGTGGTGC GCGACGAGGT CGACCGCAGC
GTCGTCACGC TGCGCGGCGA CGGCCTGTTC GAGCCCGGCA GCGCCACGCT CGCCGCGCCC
AAGGAGGCGC TGCTGCGGCG CGTGGCCGAC GCGCTGGCGC AGTTCGGCGG CGCGGTGCTC
GTCACCGGCC ACACCGACAG CCAGCCGATC CGCTCGGCGC GTTTCCCGTC CAACTGGCAC
CTCTCGCAGG AGCGCGCCGG CGCGGTGCGC GAGCTGCTGG TGAGCCAGCA GGTGGCCACC
GAGCGGGTGC GCGCCGAGGG CCGCGCCGAC GGCGAGCCGG TGGTCGCCAA TGACAGCGCC
GGCAACCGGG CGCTGAACCG GCGCGTCGAG ATCACGCTGT TCGTCGCCGC GCCGCCGGGC
GTGGCCACGG CCGCCAGACC CGCAACCCCC ACGGCCACGC CCGCATCCGG AGCCCGGCCA
TGA
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| Protein sequence | MSAQPPRPGA GPNDPHDPFA ALDSGATVIR PNPGARAAPA RMPAAQEPPA ADTPLPAQGL
NPLVSLANRL LLAVPQLRAT RHVADPAALK HSLAQAVRDF STAAAAAGIT PQQVMAARYV
LCTVLDEAAS DTPWGGAGVW AQHSLLVTFH NEAWGGEKVF QLMARLAGQP AEHRDLLELI
YAALALGFEG RFRAIENGRA QLDAVRDKLA RIVLQARGDH APALAQHWQV EAVAQRALPG
WLPLLVTALV LGLLLVAAYI GLSFWLGARS DPVFGQIQGL RLNPPVAAVA QPAPQPRLAT
FLRPEIAEGA VVVRDEVDRS VVTLRGDGLF EPGSATLAAP KEALLRRVAD ALAQFGGAVL
VTGHTDSQPI RSARFPSNWH LSQERAGAVR ELLVSQQVAT ERVRAEGRAD GEPVVANDSA
GNRALNRRVE ITLFVAAPPG VATAARPATP TATPASGARP
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