Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4055 |
Symbol | |
ID | 6162888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4540844 |
End bp | 4542181 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641666833 |
Product | type VI secretion protein |
Protein accession | YP_001793072 |
Protein GI | 171060723 |
COG category | [S] Function unknown |
COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000569036 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCCTGC ATGACAAGGT CGCGTGGTCG CAGGGCATGT TCCTGCAGCC GCACCATTTC CAGCAGGAAA CGCGTGCGCT CGAACACCTG ATCGACACCC GCCTGCGTGC CGCCGACGCG CACGCCTGGG GCCACGCCGA GCTGGTGCTC GACGAATCGC TGCTCGCACT CGGCCGCGTC GGCCTGGTGC GCGCGCGTGG CGTGCTGCCC GACGGCACGC CCTACGCGCT GCCCGATCAC GACCCGCTGC CCGCCCCGCT CGAGGTGCCG GCCGACCTCA AGGGCGAGCG GGTCTGCCTG GCCGCGCCCC TGGCGCGTGC GGGCGCCACC GATTTCGACC TCGGCCTCGA CGGCAGCGCC GCCGACGCCG CGCGCTACGG CGTCACCGAG CTGCAGCTGC GCGACCAGAC CAACGCCACC GACGAGCCGC AGACGATCCA GGTCGGCCGC CTGCGGCTGC GGCTGCTGCG CGAGCGCGAA CTCGGCAACG GCTGGACGGC GCTGGGCGTG GCGCGCGTGA TCGAGCGCCG CGCCGACGCC CAGGTGGTGC TCGACCGCGC CTACATCCCG CCGCAGACCC GGCTCGACGC CACCGAGCAC CTGCACGCCT CGGCCGCGCT GCTGCACGGG CGGCTGCAGC AGTTCGCCCG CCTGCTGGCC GAGCGCATGG GCAGCGCGGC GCACGGCGTC TCCGAGATCG CCGACTTCCT GCTGCTGATG ACGCTCAACC GCAACGAGCC GCTGTTCCGC CAGTTCGCCG GCGGCCCGCA GGTGCACCCG GCGCTGTTCC ACCGCGCCTG CCTGCAGCTG GCCGGCGAGC TCAGCAGCTT CGGCACCGAC AGCCGCACGC CGCGCGAGTT CGCGCTCTAT CGGCACGACG ACCTGCAGGC CACCTTCGCG ACGCTGATCG AGCAGCTGCG CGTGCAGCTG TCGGGCGTGC CGGTGCCACG CGCCACGCCG ATCGAGCTGA CCGACCGCCA GCACGGCTTC CGCACCGCCG TGATCCGCGA CACCGAGCTG CTGCGCGGCG CCGCCTTCGT GCTGGCGGTG CACGCGCAGC TGCCGGCCGA GCAGCTCAGC CAGCGCTTCC TGGCGCACGC CAAGGTCGGC CCGGTCGAGC GCATCAAGGA GCTGGTCAGC CTGGCGCTGC CCGGCATCGC GCTGCGCAGC CTGCCGGTGG CGCCGCGCCA GCTGCCGTTC CACGCCGGCC ATCACTACTT CGAGGTGCAG CGCGACGGCG AGCTGTGGAA GCAGCTCGAA CACAGCGGCA ACCTGGCGCT GCACGTGGCC GGCGACTTCC CCGGGCTCGA GCTGCAGCTG TGGGCGATCC GGCCCTGA
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Protein sequence | MTLHDKVAWS QGMFLQPHHF QQETRALEHL IDTRLRAADA HAWGHAELVL DESLLALGRV GLVRARGVLP DGTPYALPDH DPLPAPLEVP ADLKGERVCL AAPLARAGAT DFDLGLDGSA ADAARYGVTE LQLRDQTNAT DEPQTIQVGR LRLRLLRERE LGNGWTALGV ARVIERRADA QVVLDRAYIP PQTRLDATEH LHASAALLHG RLQQFARLLA ERMGSAAHGV SEIADFLLLM TLNRNEPLFR QFAGGPQVHP ALFHRACLQL AGELSSFGTD SRTPREFALY RHDDLQATFA TLIEQLRVQL SGVPVPRATP IELTDRQHGF RTAVIRDTEL LRGAAFVLAV HAQLPAEQLS QRFLAHAKVG PVERIKELVS LALPGIALRS LPVAPRQLPF HAGHHYFEVQ RDGELWKQLE HSGNLALHVA GDFPGLELQL WAIRP
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