Gene Lcho_4053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4053 
Symbol 
ID6162886 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4539528 
End bp4540166 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content71% 
IMG OID641666831 
Productbeta-lactamase domain-containing protein 
Protein accessionYP_001793070 
Protein GI171060721 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00000967513 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGCGCT ACCTCACCGT CCCCGTCACC GCCTTCCAGC AGAACTGTTC GATCGTCTGG 
TGCGATGAAA CCCTGGCCGC CGCGGTCATC GACCCCGGCG GCGACCTGCC GCGCATCCAG 
GCCGAAGTGG CCCGGCTGGG CGTCAAGCTC GAACAGATCT GGCTCACCCA CGCCCACATC 
GACCACGCCG GCGGCACCGG CACGCTCGCG CGCGAACTCG GCCTGCCGAT CGTCGGCCCG 
CACGAGGGCG ACCAGTTCTG GATCGACGGC CTCGACCAGC AGAGCCGCAT GTTCGGTTTC 
CCGCCGGTCG AGCCGTTCAA GCCGACCCGC TGGCTGCATG ACGGCGACAG TGTCAGCATC 
GGCCACAGCA CGCTGGCCGT GCGCCACTGC CCCGGCCACA CGCCCGGCCA CGTGGTGTTC 
CACAGCGCCG AGATCCGGCG CTGCTTCGTC GGCGACGTGC TGTTCGCCGG CAGCATCGGC 
CGCACCGACT TCCCCGGCGG CGACCACGCC ACGCTGATCG CCAGCATCAC GCAGCGGCTC 
TGGCCGATGG GCGACGACAC CGTCTTCATA CCCGGCCACG GCCCGGAAAG CAGCTTCGGC 
CGCGAGCGCC GCAGCAACCC GCACGTGCGC GGCACCTGA
 
Protein sequence
MLRYLTVPVT AFQQNCSIVW CDETLAAAVI DPGGDLPRIQ AEVARLGVKL EQIWLTHAHI 
DHAGGTGTLA RELGLPIVGP HEGDQFWIDG LDQQSRMFGF PPVEPFKPTR WLHDGDSVSI 
GHSTLAVRHC PGHTPGHVVF HSAEIRRCFV GDVLFAGSIG RTDFPGGDHA TLIASITQRL 
WPMGDDTVFI PGHGPESSFG RERRSNPHVR GT