Gene Lcho_4045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4045 
Symbol 
ID6163232 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4532324 
End bp4533043 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content72% 
IMG OID641666823 
Producthypothetical protein 
Protein accessionYP_001793062 
Protein GI171060713 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.0000000302623 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACACGC AACCCGATCC GCACCTCGCC GGCCAGCGCC GGCAACTGAT CCGGTGGCTG 
GCCGCGATGG CCTGCACCGG CGGCCTGGGC GCCGCGCGCG CGGCCACGCC GAGCGCCGCC 
GACGCCACCG CCGGCCTGCG GGCGGCGCTC GAATTCGGCG CCAAAGCCGC GGTCGCACAG 
CTGGGCAGGA CCGACGGCTT CCTGGCCAAT CCGCTGGTCC ACATCCCCCT GCCCGACACC 
CTGCAGCGCG CCGCCAAGCT GCTGCGCGCC ACCGGCCAGG GCAAGCGCCT CGACGAGCTC 
GAGACCGCGA TGAACCGCGC CGCCGAACTC GCCGTGCCCG AGGCCCAGAC GCTGCTGATC 
GACGCCGTCA AGAGCATGAC GGTGGACGAC GCGGCGCAGA TCCTGCGCGG CTCCGACACC 
GCGGTGACCG AGTTCTTCGC CGGCCGCACC CGCGAGCCGC TGGCCGAGAA GTTCCTGCCG 
ATCGTCAGCG CCGCCACCGA ACAGGTCTCG CTGGCCCGCA AGTACAACGC CGTGGCCTCG 
CGGGCCAGCC GCTTCGGCCT GCTGTCGGCC GAAAACGCCA ACCTGCAGCA GTTCGTCACC 
GGCAAGGCGC TCGACGGGCT CTACAAGATG ATCGGCGAGG AAGAAAAGAA GATCCGCCAG 
GACCCGGTCG CCACCGGCCA GGCGATCCTG CAGTCGGTCT TCGGTGCGCT CAAGAAGTGA
 
Protein sequence
MHTQPDPHLA GQRRQLIRWL AAMACTGGLG AARAATPSAA DATAGLRAAL EFGAKAAVAQ 
LGRTDGFLAN PLVHIPLPDT LQRAAKLLRA TGQGKRLDEL ETAMNRAAEL AVPEAQTLLI 
DAVKSMTVDD AAQILRGSDT AVTEFFAGRT REPLAEKFLP IVSAATEQVS LARKYNAVAS 
RASRFGLLSA ENANLQQFVT GKALDGLYKM IGEEEKKIRQ DPVATGQAIL QSVFGALKK