Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4023 |
Symbol | |
ID | 6163051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4505696 |
End bp | 4506439 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641666803 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001793042 |
Protein GI | 171060693 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000245207 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGGCTACCT GGGATTGGCA GGTTTTCTGC AAGAGCACCA TCGAGGGCGA GGTGGTCGCG GGCTGCTTGG GCAGCGGCGG CGACATCACC TACCTCGACT GGCTGCTGTC GGCCTGGGGC TGGACGCTGT CGGTGGCGGT GCTGGCGCTG ATCGTCGCGC TGGCGGTCGG CTCGCTGATG GGCATCTTCC GCACCACGCC CAGCCGCGCA CTGGTGGCAC TGGGCAACAG CTGGACCGAG CTGTTCCGCA ACATCCCGCT GCTGGTGCAG ATCTTCCTCT GGTACCACGT GCTGCCGCAG ATCTTCCCGT CGCTGCAGGC CATACCGAGC TTCATCCTGG TGGTCGTCGG GCTGGGATTC TTCACCTCGG CGCGGGTCTC CGAGCAGGTC AAGGCCGGCA TCCAGACCCT GCCCAAGGGC CAGCGCTACG CCGGCCTGGC GATGGGCCTG ACCTTGCCCC AGACCTACCG CTACGTGCTG CTGCCGATGG CATTTCGCAT CGTCATCCCG CCGCTGACCA GCGAGAGCAT GAACATCATC AAGAACTCCT CGGTGGCGTT CGCGGTGTCG GTCACCGAAC TGACGATGTT CGCCATGCAG GCGCAGGAAG AAACCTCGCG CGGCGTCGAG ATCTACCTGG CGGTGACGGC GCTGTACTTC ATCTCGGCCT TCTTCATCAA CCGGGTCGCG CTGTTCATCG AGCACCGCGT GCAGGTGCCC GGCATGCTGG GAGGCGGCAA ATGA
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Protein sequence | MATWDWQVFC KSTIEGEVVA GCLGSGGDIT YLDWLLSAWG WTLSVAVLAL IVALAVGSLM GIFRTTPSRA LVALGNSWTE LFRNIPLLVQ IFLWYHVLPQ IFPSLQAIPS FILVVVGLGF FTSARVSEQV KAGIQTLPKG QRYAGLAMGL TLPQTYRYVL LPMAFRIVIP PLTSESMNII KNSSVAFAVS VTELTMFAMQ AQEETSRGVE IYLAVTALYF ISAFFINRVA LFIEHRVQVP GMLGGGK
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