Gene Lcho_4023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4023 
Symbol 
ID6163051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4505696 
End bp4506439 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content65% 
IMG OID641666803 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_001793042 
Protein GI171060693 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00000245207 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGGCTACCT GGGATTGGCA GGTTTTCTGC AAGAGCACCA TCGAGGGCGA GGTGGTCGCG 
GGCTGCTTGG GCAGCGGCGG CGACATCACC TACCTCGACT GGCTGCTGTC GGCCTGGGGC
TGGACGCTGT CGGTGGCGGT GCTGGCGCTG ATCGTCGCGC TGGCGGTCGG CTCGCTGATG
GGCATCTTCC GCACCACGCC CAGCCGCGCA CTGGTGGCAC TGGGCAACAG CTGGACCGAG
CTGTTCCGCA ACATCCCGCT GCTGGTGCAG ATCTTCCTCT GGTACCACGT GCTGCCGCAG
ATCTTCCCGT CGCTGCAGGC CATACCGAGC TTCATCCTGG TGGTCGTCGG GCTGGGATTC
TTCACCTCGG CGCGGGTCTC CGAGCAGGTC AAGGCCGGCA TCCAGACCCT GCCCAAGGGC
CAGCGCTACG CCGGCCTGGC GATGGGCCTG ACCTTGCCCC AGACCTACCG CTACGTGCTG
CTGCCGATGG CATTTCGCAT CGTCATCCCG CCGCTGACCA GCGAGAGCAT GAACATCATC
AAGAACTCCT CGGTGGCGTT CGCGGTGTCG GTCACCGAAC TGACGATGTT CGCCATGCAG
GCGCAGGAAG AAACCTCGCG CGGCGTCGAG ATCTACCTGG CGGTGACGGC GCTGTACTTC
ATCTCGGCCT TCTTCATCAA CCGGGTCGCG CTGTTCATCG AGCACCGCGT GCAGGTGCCC
GGCATGCTGG GAGGCGGCAA ATGA
 
Protein sequence
MATWDWQVFC KSTIEGEVVA GCLGSGGDIT YLDWLLSAWG WTLSVAVLAL IVALAVGSLM 
GIFRTTPSRA LVALGNSWTE LFRNIPLLVQ IFLWYHVLPQ IFPSLQAIPS FILVVVGLGF
FTSARVSEQV KAGIQTLPKG QRYAGLAMGL TLPQTYRYVL LPMAFRIVIP PLTSESMNII
KNSSVAFAVS VTELTMFAMQ AQEETSRGVE IYLAVTALYF ISAFFINRVA LFIEHRVQVP
GMLGGGK