| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4022 |
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| Symbol | |
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| ID | 6163050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4505034 |
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| End bp | 4505699 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641666802 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001793041 |
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| Protein GI | 171060692 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00000222759 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCTGG ATTTCAGTTT CCTGAACTGG GACATCGTCG CCAGCTTCAT CGCCAAGGGC
TTCATCTTCT CGATCCAGCT CACGCTGGTG GCGATGATCG GCGGCATCCT GCTGGGCACC
CTGCTGGCGC TGATGCGGCT GTCGGGCAAG CCGTGGCTGG TGCTGCCGTC GGCGGCCTAC
GTCAACACCA TGCGCAGCGT GCCGCTGGTG ATGGTGATCC TGTGGTTCTT CCTGCTGATC
CCGCTGCTGA TCGGCCGGCC CATGGGCGCC GAACTGTCGG CCATCGTCAC CTTCACGCTG
TTCGAGGCGG CCTACTACTC CGAGATCATG CGCGCGGGCA TCCAGAGCGT GCCGCGTGGC
CAGGTGCACG CGGGCTACGC GGTGGGCATG ACCTATCGCC AGACCATGCA ACTGGTGGTG
CTGCCGCAGG CCTTCCGCAA CATGCTGCCG GTGCTGCTGA CGCAGACCAT CATCCTGTTC
CAGGACACCA GCCTGGTCTA CGCCATCGGC GCCTACGACC TGCTCAAGGG CTTCGAGGTC
GCGGGCAAGA ACTTCAACCG GCCGGTCGAG ACCTACCTGG TCGCCGCCGT CGTCTACTTC
GTGATCTGCT TTGGCCTGTC GATGCTCGTG CGTCGGCTGC AGAAGAAGAT CGCCATCATC
CGCTGA
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| Protein sequence | MNLDFSFLNW DIVASFIAKG FIFSIQLTLV AMIGGILLGT LLALMRLSGK PWLVLPSAAY
VNTMRSVPLV MVILWFFLLI PLLIGRPMGA ELSAIVTFTL FEAAYYSEIM RAGIQSVPRG
QVHAGYAVGM TYRQTMQLVV LPQAFRNMLP VLLTQTIILF QDTSLVYAIG AYDLLKGFEV
AGKNFNRPVE TYLVAAVVYF VICFGLSMLV RRLQKKIAII R
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