Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4018 |
Symbol | |
ID | 6163046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4501347 |
End bp | 4502222 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666798 |
Product | heat shock protein HtpX |
Protein accession | YP_001793037 |
Protein GI | 171060688 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0501] Zn-dependent protease with chaperone function |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000275488 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACGCA TCGCGCTGTT CCTGATCACC AACCTGGCCG TGATGGCCGT GCTGGGCATC ACCGCCAGCC TGCTGGGCTT CAACCGCTAC TACGCCGCCA CCGGGCTTGA TCTGGGCGCC TTGCTCGGTT TCGCGATGGT GATGGGCTTC GGCGGCGCCT TCATCTCGCT GCTGATGAGC AAGCCGATGG CCAAGTGGAG CACCGGTGCG GTCGTCATCA ACGACTCGCC CGAGCCGATG CACCGCTGGC TGGTCGACAC GGTGGCGCGC TTCTCCAAGC GTGCCGGGAT CGAGATGCCC GAGGTCGCGC TCTACGAGGG CGAGCCCAAC GCCTTTGCCA CCGGCGCGTT CAAGAACTCG GCGCTGGTCG CGGTGTCGAC CGGTCTGCTG CAGAGCATGA GCCGCGACGA GGTCGAGGCG GTGATCGGCC ACGAGGTGGC GCACGTCGCC AACGGCGACA TGGTGACGAT GACGCTGATC CAGGGCGTGA TGAACACCTT CGTGGTGTTC CTGTCGCGTG CGATCGGCTA CTTCATCGAC CGGGTGGTGC TCAAGAACGA CCGTGAAGGC CCCGGCATCG GCTACATGGT GACCACCGTG GTGCTCGACC TGCTGCTCGG CCTGGTCGCC GCGATGATCG TGGCCTGGTT CTCGCGCCAG CGCGAGTTCC GCGCCGACGC CGGTGCGGCC CAGCTGATGG GCAGCCGCGT GCCGATGCAG CGCGCGCTGG CGCGCCTGGG CGGCATCGAC CCCGGCGAGC TGCCGCAGAG CGTGGCGACG ATGGGCATCA ACGGCCGGCC CAGCGGCATC ATGGCGCTGT TCTCCAGCCA CCCGCCGATC GAGGACCGCA TCCGCGCGCT GCAGCAATCT GCCTGA
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Protein sequence | MKRIALFLIT NLAVMAVLGI TASLLGFNRY YAATGLDLGA LLGFAMVMGF GGAFISLLMS KPMAKWSTGA VVINDSPEPM HRWLVDTVAR FSKRAGIEMP EVALYEGEPN AFATGAFKNS ALVAVSTGLL QSMSRDEVEA VIGHEVAHVA NGDMVTMTLI QGVMNTFVVF LSRAIGYFID RVVLKNDREG PGIGYMVTTV VLDLLLGLVA AMIVAWFSRQ REFRADAGAA QLMGSRVPMQ RALARLGGID PGELPQSVAT MGINGRPSGI MALFSSHPPI EDRIRALQQS A
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