Gene Lcho_4012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4012 
Symbol 
ID6163423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4494916 
End bp4495575 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content68% 
IMG OID641666792 
Producthypothetical protein 
Protein accessionYP_001793031 
Protein GI171060682 
COG category[S] Function unknown 
COG ID[COG2928] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00000640772 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAGAAAT ACATCATCGC GGGCCTGCTC GTCTGGCTGC CCCTGGCGAT CACGATCTGG 
GTGCTCGCCT GGGTGGTCGG CCTGCTCGAC GGCGTCTTCC AGGCGCTGCT GGCACTGGCC 
GGTGCGGTGC TGCCGGCCGG CGCCGGCGAG GCGCTCGACC GCCTCGCCCA CGTGCCCGGC 
CTGGGCGTGC TGCTGCTGGT GCTGACAATG CTGCTGACGG GCATGTTCGT CGCCAACTTC 
GTCGGCCAGT GGTGGCTGCG CCAGTGGGAC CGCATCCTCG GCCAGATCCC GATCGTCAAG 
TCGATCTACA ACTCGGTCAA GCAGGTTTCC GACACGCTGT TCTCGAGCAG CGGGCAGGCC 
TTCCGCGAAG CCGTGCTGGT GCAGTACCCG CGCCAGGGCA TCTGGACGAT CGCCTTCGTG 
ACCGGCAAGC CCGGCGGCGA AGTGGCCGCT CACCTGAGCG ACGACTTCGT CAGCCTCTAC 
GTGCCGACGA CGCCCAATCC GACCTCGGGC TTCTTCCTGA TGGCCCCGCG CGCCGACGTG 
CGCGTGCTGG CCATGAGCGT CGACGAGGCG CTGAAGTACA TCATCTCGAT GGGCGTGGTC 
GGCCCCGACG GCAACGGCAG CCCGTCGATC CAGCCGATCC CGGCGCCGGT GCAGAACTGA
 
Protein sequence
MKKYIIAGLL VWLPLAITIW VLAWVVGLLD GVFQALLALA GAVLPAGAGE ALDRLAHVPG 
LGVLLLVLTM LLTGMFVANF VGQWWLRQWD RILGQIPIVK SIYNSVKQVS DTLFSSSGQA 
FREAVLVQYP RQGIWTIAFV TGKPGGEVAA HLSDDFVSLY VPTTPNPTSG FFLMAPRADV 
RVLAMSVDEA LKYIISMGVV GPDGNGSPSI QPIPAPVQN