Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4008 |
Symbol | |
ID | 6160519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4491109 |
End bp | 4492149 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641666788 |
Product | UDP-glucose 4-epimerase |
Protein accession | YP_001793027 |
Protein GI | 171060678 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1087] UDP-glucose 4-epimerase |
TIGRFAM ID | [TIGR01179] UDP-glucose-4-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000000293012 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCACTG TCCTCCTCAC TGGCGCCACC GGCTACATCG GCTCGCACAC CTGGCTCGCC CTGCACAAGG CGGGCTACCG TGTCCTGGGG GTGGACAACT TCGCCAACAG CTCCCCGCAG GTCCTGGATC GCCTGGCCGG TCTGCTGGGC GAGGCCCCGG CGTTCGAGGA GGCCGACGTC AACGACACCG CGGCCATGGA GCGCATCATC GCCGCGCACG GCGTGCAGGC GGTGGTGCAT TTCGCCGCGC ACAAGGCGGT GGGCGAGTCG GCCGAACAGC CGCTCGAGTA TTTCCGCAAC AACCTCGGCG GGCTGGTCAG CGTGGGCCAG GCGATGGCCG CGCAGGACGT GTTCTCGCTC GTCTTCAGTT CGTCGGCGAC GGTCTACGGC CAGCCCGAAA CCCTGCCGAT CCGCGAGGAC TCGGCCCTGT CGGCGACCAA TCCCTACGGC CTGACCAAGC TGATGGGCGA ACAGCTGCTG CGTGAACTCG AGCGCTGCGA CTCGCGCTGG AAGATCGCCT ACCTGCGCTA TTTCAATCCG GTGGGCGCAC ATTCGAGTGG CCTGATCGGC GAAGACCCGC GCGGCATCCC GAACAACCTG ATGCCTTACG TGGCGCAGGT GGCGGTGGGC AAGCGGCCGT TCCTGCAGGT CTACGGCAAC GACTACGACA CCCCCGACGG CACCGGCGTG CGCGATTACA TCCACGTGGT CGACCTCGCG GCCGGCCATG TTGCCGCCGT GCGCCATCTG CTGGAGCGCA AGCAGTCGCT CACCGTCAAC CTCGGCACCG GCCAGGGCTA CAGCGTGCTC GACGTGATCC GCGCCTTCGA GCGCGCCAGC GGCCGTGCCG TGCCGTTCAA GACGGTCGCC CGGCGCCCGG GTGACGTGGC CTCCTGCTAT GCCGACCCGG CCCTGGCGCG TGAGCTGCTG GGCTGGCAGG CCGAACTCGG TCTCGACGCG ATGTGCGCCG ACAGCTGGCG CTGGCAATCG CGCAACCCGC AGGGCTACGC GCCGGTGGTC GGGCAGTCGC TGTCGGCCTG A
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Protein sequence | MTTVLLTGAT GYIGSHTWLA LHKAGYRVLG VDNFANSSPQ VLDRLAGLLG EAPAFEEADV NDTAAMERII AAHGVQAVVH FAAHKAVGES AEQPLEYFRN NLGGLVSVGQ AMAAQDVFSL VFSSSATVYG QPETLPIRED SALSATNPYG LTKLMGEQLL RELERCDSRW KIAYLRYFNP VGAHSSGLIG EDPRGIPNNL MPYVAQVAVG KRPFLQVYGN DYDTPDGTGV RDYIHVVDLA AGHVAAVRHL LERKQSLTVN LGTGQGYSVL DVIRAFERAS GRAVPFKTVA RRPGDVASCY ADPALARELL GWQAELGLDA MCADSWRWQS RNPQGYAPVV GQSLSA
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