Gene Lcho_4008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4008 
Symbol 
ID6160519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4491109 
End bp4492149 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content69% 
IMG OID641666788 
ProductUDP-glucose 4-epimerase 
Protein accessionYP_001793027 
Protein GI171060678 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1087] UDP-glucose 4-epimerase 
TIGRFAM ID[TIGR01179] UDP-glucose-4-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000000293012 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCACTG TCCTCCTCAC TGGCGCCACC GGCTACATCG GCTCGCACAC CTGGCTCGCC 
CTGCACAAGG CGGGCTACCG TGTCCTGGGG GTGGACAACT TCGCCAACAG CTCCCCGCAG
GTCCTGGATC GCCTGGCCGG TCTGCTGGGC GAGGCCCCGG CGTTCGAGGA GGCCGACGTC
AACGACACCG CGGCCATGGA GCGCATCATC GCCGCGCACG GCGTGCAGGC GGTGGTGCAT
TTCGCCGCGC ACAAGGCGGT GGGCGAGTCG GCCGAACAGC CGCTCGAGTA TTTCCGCAAC
AACCTCGGCG GGCTGGTCAG CGTGGGCCAG GCGATGGCCG CGCAGGACGT GTTCTCGCTC
GTCTTCAGTT CGTCGGCGAC GGTCTACGGC CAGCCCGAAA CCCTGCCGAT CCGCGAGGAC
TCGGCCCTGT CGGCGACCAA TCCCTACGGC CTGACCAAGC TGATGGGCGA ACAGCTGCTG
CGTGAACTCG AGCGCTGCGA CTCGCGCTGG AAGATCGCCT ACCTGCGCTA TTTCAATCCG
GTGGGCGCAC ATTCGAGTGG CCTGATCGGC GAAGACCCGC GCGGCATCCC GAACAACCTG
ATGCCTTACG TGGCGCAGGT GGCGGTGGGC AAGCGGCCGT TCCTGCAGGT CTACGGCAAC
GACTACGACA CCCCCGACGG CACCGGCGTG CGCGATTACA TCCACGTGGT CGACCTCGCG
GCCGGCCATG TTGCCGCCGT GCGCCATCTG CTGGAGCGCA AGCAGTCGCT CACCGTCAAC
CTCGGCACCG GCCAGGGCTA CAGCGTGCTC GACGTGATCC GCGCCTTCGA GCGCGCCAGC
GGCCGTGCCG TGCCGTTCAA GACGGTCGCC CGGCGCCCGG GTGACGTGGC CTCCTGCTAT
GCCGACCCGG CCCTGGCGCG TGAGCTGCTG GGCTGGCAGG CCGAACTCGG TCTCGACGCG
ATGTGCGCCG ACAGCTGGCG CTGGCAATCG CGCAACCCGC AGGGCTACGC GCCGGTGGTC
GGGCAGTCGC TGTCGGCCTG A
 
Protein sequence
MTTVLLTGAT GYIGSHTWLA LHKAGYRVLG VDNFANSSPQ VLDRLAGLLG EAPAFEEADV 
NDTAAMERII AAHGVQAVVH FAAHKAVGES AEQPLEYFRN NLGGLVSVGQ AMAAQDVFSL
VFSSSATVYG QPETLPIRED SALSATNPYG LTKLMGEQLL RELERCDSRW KIAYLRYFNP
VGAHSSGLIG EDPRGIPNNL MPYVAQVAVG KRPFLQVYGN DYDTPDGTGV RDYIHVVDLA
AGHVAAVRHL LERKQSLTVN LGTGQGYSVL DVIRAFERAS GRAVPFKTVA RRPGDVASCY
ADPALARELL GWQAELGLDA MCADSWRWQS RNPQGYAPVV GQSLSA