Gene Lcho_4002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4002 
Symbol 
ID6161405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4485274 
End bp4485843 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content69% 
IMG OID641666782 
Producthypothetical protein 
Protein accessionYP_001793021 
Protein GI171060672 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.000000676409 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCGTGA GCCGGCGGCG CATCGGTGCT GCGGCGTTGC TGCTGGCGCT GGGGGCGGGA 
TGGGGCGCCG GGGCGCATGC CGCGTCCGAC GTGATCGAGC TGACGCGCCT CGAGGCGGTG 
CGTACCGAGC AGGGCGTGCT GCTGGATTTC GAGGCCCGCT TCGAGCTGCC GCAGGGGGTC 
GAGGGCGCGC TGCAGAAGGG CGTGGCGCTG CATTTCGTCG CCGAGGCGGA CGTGATGCGC 
GAGCGCTGGT ACTGGCCCGA CAAGCGCATC GCCCGCACCA GCCGCACCTG GCGCCTGAGC 
TACCAGCCGC TGACCTTCAG CTACCGCGTC AGCCTGGGCG GGCTGTCGCA GACCTATTCC 
ACGCTCAGCG ATGCGCTGCG TTCGTTGCAG CGCCTCAATC GCTGGCGCAT CGCCGATCTC 
GGTGATGGCG AGGACGCCGA GTACGTCGAC TTCCGCTACC GGCTCGATGT CGATCAGTTG 
CCCCGGCCGC TGCAGATCAC GATCGGCAGC CAGCCCGAAT GGGCGCTGCG CATCGAGCGT 
ACGATTCGAC TGCTGCCGCA GACGCGTTGA
 
Protein sequence
MSVSRRRIGA AALLLALGAG WGAGAHAASD VIELTRLEAV RTEQGVLLDF EARFELPQGV 
EGALQKGVAL HFVAEADVMR ERWYWPDKRI ARTSRTWRLS YQPLTFSYRV SLGGLSQTYS 
TLSDALRSLQ RLNRWRIADL GDGEDAEYVD FRYRLDVDQL PRPLQITIGS QPEWALRIER 
TIRLLPQTR