| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4001 |
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| Symbol | |
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| ID | 6161404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4482922 |
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| End bp | 4485246 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666781 |
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| Product | histidine kinase |
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| Protein accession | YP_001793020 |
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| Protein GI | 171060671 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00000232996 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCGCC GTTCCCTGCG CTGGACACTG CTGGTCGCCC TGATCGCCAC CGGTGCCGCC
GTGCTGGTGC TGGCCTTCCT GCTGGCGGTG GCGACCAACA ACCGGGCCCT CTACGAGCGC
CATTTCGGCT GGCTGCTGTG GGTCAACATC GGCGTCGCCA CGGCGCTGGG CGTGGTCATC
GTGCTGGCCG TGCTGCACCT GGCCCGGCGC ATGCGGCACG GCAAGTTCGG CAGCAAGCTG
CTGTTCAAGC TGGCGGCGAT CTTCGCGTTT GTCGGCGTGT TTCCCGGGGC GGTGATCTAC
GGCGTCTCGT ACCAGTTCGT CTCGCGCAGC ATCGAGAGCT GGTTCGACGT CGAGGTCGAC
GGCGCGCTCG AAGCGGGGCT GAACCTCGGG CGCAGCACGC TGCAGATCCT CGTCAACGAC
CTGGCCGGCA AGACCCGCGT GGCCGCCGAG CGGGCCGCCG ACGCGCCCGA CCGCATGCAG
GTCCTGGCGC TCGAGCGCCT GCGCGAACAG CTCGCCGCAC AGAGCGTGGC GGTGCTGTCG
CCCAGCGGCA AGGTGCTGTA TTCGGCCGGC GGCTCGATCG CGGGGGCGCC GTTGCCGGAC
CGACCCACCA CTTCGATGCT GCGCCAGGCC CGCAGCGCCC GGGTGATCTC GCTACTCGAG
GGGCTGGATG AGGAACCGGC CGGCCGGGCC AATCCGGCCA TCGCATCCAG TGCCCGCGTC
AGGGCGATCG CCTGGGTGCC GTCGAGCGAC TACAGCCTCG GCAACGAGGA TCGGTTCCTG
CAGGTGACGC AGCTGATCCC GGCCGAACTG GCGGCCAACG CGCTGCGGGT GCAGTCGGCG
TTCAGCGAGT ACCAGCAGCG CTCGCTCGGC CGGGTCGGCC TGCGCAAGAT GTACATCGGC
ACGCTCACGC TGGCGCTCAT CCTCGGCGTG TTCAGCGCCC TGCTGATGGC GGCGGTGCTC
GGCCATCAGC TGGCCCGGCC GCTGGTGGTG CTGGCCGAGG GTGTGCGGCA GGTCGCGCGC
GGCGATCTCA CGCCCACCGA GGTGTTCAGC TCGCGCGACG AGCTCGGCGG CCTGACCCGC
TCGTTTGCCG ACATGACCCA GCAGCTGGCC GACGCGCGTG CGCTCGTCCA GACCACGCTG
GCCGAGGCCG AGAACGCCAA GCGGCACTTG CAGACGATTC TCGACAACCT CACCACCGGC
GTGATCCTGT TCACCGGGCG CGGTGGGATC GACACCGTCA ATCCGGGGGC GGCGCGCATC
CTGCGCGTGC CGATGCAGGC ATGGCAGGGT CATGCGCTGG CCCAGGTGCC GGGGCTCGAG
GCGTTCTCGC GCGCGATCGA TCAGCATTTC CTGCAGGCCA TGCAGGAGTC CGATGGCCCC
GAACACGGCC AGTGGCAGGA CACCTTCGAG CTCGGTCCGG TGCTGACGGC CGATCTCACG
CTGCTGGTGC GCGGCGCGCT GCTGCCCGAC GGCACCCGGC TGATCGTGTT CGACGACATC
ACCGAGGTGG TGTCGGCCCA GCGCAGCGTC GCCTGGGCGG AGGTGGCGCG GCGGGTGGCG
CACGAGATCA AGAACCCGCT CACGCCGATC CAGCTGTCGG CCGAGCGCCT GCAGCACAAG
CTCGAGGCCA AGCTCGCCGA ACCGGCCGAC CAGCAGATGC TGGCGCGTTC GGTGGCTACC
ATCGTCGCGC AGGTGCAAGC GCTCAAGACC ATCGTCAACG AGTTCCGCGA CTACGCCCGC
CTGCCGTCCG CCCAGCTGGC GCCGCTCGAC CTCAACGAGC TGGTGGCCGA GGTGCTGGGG
CTCTACGCGG TGCAGCAGGA GTCCGGCCGG CTCGAGGCTC GGCTGGGCGC CGCGTTGCCT
GCCTTGCTGG GTGACGCAAG CCAGTTGCGG CAGGTCATCC ACAACCTGGT CCAGAACGGC
CTCGACGCGG TGGCCGATCG CAGCGAGGGC CACGTGACCG TCAGCACCGA GGCGACTTTC
CGCGATGACG ACGGCAGTCT GCGCAGCGTG CAGCTCAAGG TGCTCGACAA TGGCCCCGGT
TTCAGCGAGG CATTGCTGAA GCGAGCCTTC GAGCCCTATG TCACGACCAA GTCTCGCGGT
ACCGGCTTGG GGCTGGCGGT GGTCAAGAAG ATCATCGACG AGCACGGAGC CCGCATCCGA
CTGAGCAATC TGGCCGATGC CGCGACAGCG TCAACAGGTG CCGGCGCAAA GAGCGGTGCA
CAAGTTTCGA TATCATTTTC GCGCTGGGCG GCGAGTGCGC CGCAGCCATC CGAACCCCGG
GCCGCCCGTG GCCGAATCCC GCCCCCCATC GTGAGCGTGT CCTGA
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| Protein sequence | MSRRSLRWTL LVALIATGAA VLVLAFLLAV ATNNRALYER HFGWLLWVNI GVATALGVVI
VLAVLHLARR MRHGKFGSKL LFKLAAIFAF VGVFPGAVIY GVSYQFVSRS IESWFDVEVD
GALEAGLNLG RSTLQILVND LAGKTRVAAE RAADAPDRMQ VLALERLREQ LAAQSVAVLS
PSGKVLYSAG GSIAGAPLPD RPTTSMLRQA RSARVISLLE GLDEEPAGRA NPAIASSARV
RAIAWVPSSD YSLGNEDRFL QVTQLIPAEL AANALRVQSA FSEYQQRSLG RVGLRKMYIG
TLTLALILGV FSALLMAAVL GHQLARPLVV LAEGVRQVAR GDLTPTEVFS SRDELGGLTR
SFADMTQQLA DARALVQTTL AEAENAKRHL QTILDNLTTG VILFTGRGGI DTVNPGAARI
LRVPMQAWQG HALAQVPGLE AFSRAIDQHF LQAMQESDGP EHGQWQDTFE LGPVLTADLT
LLVRGALLPD GTRLIVFDDI TEVVSAQRSV AWAEVARRVA HEIKNPLTPI QLSAERLQHK
LEAKLAEPAD QQMLARSVAT IVAQVQALKT IVNEFRDYAR LPSAQLAPLD LNELVAEVLG
LYAVQQESGR LEARLGAALP ALLGDASQLR QVIHNLVQNG LDAVADRSEG HVTVSTEATF
RDDDGSLRSV QLKVLDNGPG FSEALLKRAF EPYVTTKSRG TGLGLAVVKK IIDEHGARIR
LSNLADAATA STGAGAKSGA QVSISFSRWA ASAPQPSEPR AARGRIPPPI VSVS
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