| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3999 |
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| Symbol | rplC |
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| ID | 6160828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4480936 |
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| End bp | 4481616 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666777 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_001793018 |
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| Protein GI | 171060669 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.000000166113 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACTACCC CCAATCCGGG CCAACGCCTC GGTTTGCTGG GCCGCAAGGT GGGCATGATG
CGCATCTTCA CGGACGACGG CGATGCCGTG CCCGTGACCG TGCTCGACGT GTCCAACAAC
CGGGTCGCCC AGATCAAGAC GGTGGAAACC GACGGCTACA GCGCCGTTCA GGTGGCCTTT
GGTGCTCGCA AGGCATCGCG CGTGACCAAG CCCGAGGCCG GTCACCTGGC CAAGGCCGGT
GTCGAATCCG GCGAGTTGCT GCAAGAGTTC CGCGTCAGCG CCGAAGTGGC TGCTGAATGC
AAGCCGGGCT CGCAACTGCC GATCGCGATG TTCCAGGCCG GCCAGCAGGT CGACGTGCAA
GGCACGACGA TCGGCAAGGG CTTCGCCGGC ACCATCAAGC GTCACCACTT CGGCTCGCAG
CGTGCCTCCC ACGGCAACTC GCGCTCGCAC AACGTGCCGG GCTCGATCTC GATGGCGCAG
GACCCGGGTC GCGTGTTCCC GGGCAAGAAG ATGTCCGGTC ACCTGGGTGA CGACACCGTC
ACCACCCAGA ACCTCGATGT CGTGCGCGTC GACGAAGCCC GCCAGCTGCT GCTGGTCAAG
GGCGCGGTCC CGGGTGCCAA GGGTGGCTTT GTCACCGTGC GTCCGGCCGT GAAGGTCAAG
CTCAAGAAAG GGGCCAACTG A
|
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| Protein sequence | MTTPNPGQRL GLLGRKVGMM RIFTDDGDAV PVTVLDVSNN RVAQIKTVET DGYSAVQVAF
GARKASRVTK PEAGHLAKAG VESGELLQEF RVSAEVAAEC KPGSQLPIAM FQAGQQVDVQ
GTTIGKGFAG TIKRHHFGSQ RASHGNSRSH NVPGSISMAQ DPGRVFPGKK MSGHLGDDTV
TTQNLDVVRV DEARQLLLVK GAVPGAKGGF VTVRPAVKVK LKKGAN
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